Evaluation of normalization methods for cDNA microarray data by k-NN classification
暂无分享,去创建一个
Wei Wu | Eric P. Xing | Mina J. Bissell | Connie Myers | I. Saira Mian | E. Xing | I. Mian | Wei Wu | M. Bissell | C. Myers
[1] W. Cleveland,et al. Locally Weighted Regression: An Approach to Regression Analysis by Local Fitting , 1988 .
[2] David J. Spiegelhalter,et al. Machine Learning, Neural and Statistical Classification , 2009 .
[3] Huan Liu,et al. Book review: Machine Learning, Neural and Statistical Classification Edited by D. Michie, D.J. Spiegelhalter and C.C. Taylor (Ellis Horwood Limited, 1994) , 1996, SGAR.
[4] Y. Chen,et al. Ratio-based decisions and the quantitative analysis of cDNA microarray images. , 1997, Journal of biomedical optics.
[5] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[6] Bernhard Schölkopf,et al. Bounds on Error Expectation for SVM , 2000 .
[7] E. Wolski,et al. Normalization strategies for cDNA microarrays. , 2000, Nucleic acids research.
[8] Ash A. Alizadeh,et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling , 2000, Nature.
[9] J. Gray,et al. Genome changes and gene expression in human solid tumors. , 2000, Carcinogenesis.
[10] O. Chapelle,et al. Bounds on error expectation for SVM , 2000 .
[11] Jean Yee Hwa Yang,et al. Analysis of CDNA Microarray Images , 2001, Briefings Bioinform..
[12] Thomas Lengauer,et al. Centralization: a new method for the normalization of gene expression data , 2001, ISMB.
[13] D. Botstein,et al. Diversity of gene expression in adenocarcinoma of the lung , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[14] Cheng Li,et al. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application , 2001, Genome Biology.
[15] Terence P. Speed,et al. Normalization for cDNA microarry data , 2001, SPIE BiOS.
[16] M. Oh,et al. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. , 2001, Nucleic acids research.
[17] Russ B. Altman,et al. Missing value estimation methods for DNA microarrays , 2001, Bioinform..
[18] T. Kepler,et al. Normalization and analysis of DNA microarray data by self-consistency and local regression , 2002, Genome Biology.
[19] S. Wölfl,et al. Ranking: a closer look on globalisation methods for normalisation of gene expression arrays. , 2002, Nucleic acids research.
[20] S. Dudoit,et al. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. , 2002, Nucleic acids research.
[21] C. Holmes,et al. A probabilistic nearest neighbour method for statistical pattern recognition , 2002 .
[22] D. Botstein,et al. Gene expression patterns in human liver cancers. , 2002, Molecular biology of the cell.
[23] Adam B. Olshen,et al. Deriving quantitative conclusions from microarray expression data , 2002, Bioinform..
[24] John Quackenbush. Microarray data normalization and transformation , 2002, Nature Genetics.
[25] S. Knudsen,et al. A new non-linear normalization method for reducing variability in DNA microarray experiments , 2002, Genome Biology.
[26] S. Dudoit,et al. STATISTICAL METHODS FOR IDENTIFYING DIFFERENTIALLY EXPRESSED GENES IN REPLICATED cDNA MICROARRAY EXPERIMENTS , 2002 .
[27] Taesung Park,et al. Evaluation of normalization methods for microarray data , 2003 .
[28] M. Rattray,et al. A model-based analysis of microarray experimental error and normalisation. , 2003, Nucleic acids research.
[29] Yan Wu,et al. Quantitative Quality Control in Microarray Experiments and the Application in Data Filtering, Normalization and False Positive Rate Prediction , 2003, Bioinform..
[30] Jian Huang,et al. A Semi-linear Model for Normalization and Analysis of cDNA Microarray Data , 2003 .
[31] Dale L. Wilson,et al. New Normalization Methods for CDNA Microarray Data , 2003, Bioinform..
[32] Terry Speed,et al. Normalization of cDNA microarray data. , 2003, Methods.
[33] M. Terris,et al. Gene expression patterns in renal cell carcinoma assessed by complementary DNA microarray. , 2003, The American journal of pathology.
[34] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[35] Alexander G. Gray,et al. Efficient exact k-NN and nonparametric classification in high dimensions , 2003, NIPS 2003.
[36] T. Speed,et al. Statistical issues in cDNA microarray data analysis. , 2003, Methods in molecular biology.
[37] D. Botstein,et al. Variation in gene expression patterns in human gastric cancers. , 2003, Molecular biology of the cell.
[38] Hao Wu,et al. MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments , 2003 .
[39] Sandrine Dudoit,et al. Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data , 2003 .
[40] D. Albertson,et al. Chromosome aberrations in solid tumors , 2003, Nature Genetics.
[41] Gavin C. Cawley,et al. Efficient leave-one-out cross-validation of kernel fisher discriminant classifiers , 2003, Pattern Recognit..
[42] X. Cui,et al. Transformations for cDNA Microarray Data , 2003, Statistical applications in genetics and molecular biology.
[43] Terence P. Speed,et al. A benchmark for Affymetrix GeneChip expression measures , 2004, Bioinform..
[44] Sayan Mukherjee,et al. Choosing Multiple Parameters for Support Vector Machines , 2002, Machine Learning.
[45] L. Qin,et al. Empirical evaluation of data transformations and ranking statistics for microarray analysis. , 2004, Nucleic acids research.
[46] P. Tam,et al. Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[47] Ulisses Braga-Neto,et al. Bolstered error estimation , 2004, Pattern Recognit..
[48] Geoffrey J. McLachlan,et al. Analyzing Microarray Gene Expression Data , 2004 .
[49] Willem A Rensink,et al. Statistical issues in microarray data analysis. , 2006, Methods in molecular biology.