Towards a theory of landscapes
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[1] J. Kiefer,et al. An Introduction to Stochastic Processes. , 1956 .
[2] Bernard Derrida,et al. The probability distribution of the partition function of the random energy model , 1989 .
[3] H. Hotelling. Analysis of a complex of statistical variables into principal components. , 1933 .
[4] H. M. Martinez,et al. An RNA folding rule , 1984, Nucleic Acids Res..
[5] David L. Powers. Eigenvectors of distance-regular graphs , 1988 .
[6] Horst Bunke,et al. Syntactic and Structural Pattern Recognition , 1988, NATO ASI Series.
[7] P. Schuster,et al. Statistics of RNA secondary structures , 1993, Biopolymers.
[8] Henri Orland,et al. White and weighted averages over solutions of Thouless Anderson Palmer equations for the Sherrington Kirkpatrick spin glass , 1980 .
[9] Schuster,et al. Physical aspects of evolutionary optimization and adaptation. , 1989, Physical review. A, General physics.
[10] E. D. Weinberger,et al. The NK model of rugged fitness landscapes and its application to maturation of the immune response. , 1989, Journal of theoretical biology.
[11] P. Anderson,et al. Application of statistical mechanics to NP-complete problems in combinatorial optimisation , 1986 .
[12] Weinberger,et al. Local properties of Kauffman's N-k model: A tunably rugged energy landscape. , 1991, Physical review. A, Atomic, molecular, and optical physics.
[13] A. Neumaier,et al. Distance Regular Graphs , 1989 .
[14] C. R. Rao,et al. Linear Statistical Inference and its Applications , 1968 .
[15] Lov K. Grover. Local search and the local structure of NP-complete problems , 1992, Oper. Res. Lett..
[16] P. Schuster,et al. From sequences to shapes and back: a case study in RNA secondary structures , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[17] Donald L. Miller,et al. Exact Solution of Large Asymmetric Traveling Salesman Problems , 1991, Science.
[18] R. E. Ingram. Some characters of the symmetric group , 1950 .
[19] G. Oster,et al. Theoretical studies of clonal selection: minimal antibody repertoire size and reliability of self-non-self discrimination. , 1979, Journal of theoretical biology.
[20] A. W. M. Dress,et al. Evolution on sequence space and tensor products of representation spaces , 1988 .
[21] J. McCaskill. The equilibrium partition function and base pair binding probabilities for RNA secondary structure , 1990, Biopolymers.
[22] J. Bernasconi. Low autocorrelation binary sequences : statistical mechanics and configuration space analysis , 1987 .
[23] W. Salser. Globin mRNA sequences: analysis of base pairing and evolutionary implications. , 1978, Cold Spring Harbor symposia on quantitative biology.
[24] Kuo-Chung Tai,et al. The Tree-to-Tree Correction Problem , 1979, JACM.
[25] Eugene L. Lawler,et al. A Guided Tour of Combinatorial Optimization , 1985 .
[26] D S Rumschitzki. Spectral properties of Eigen evolution matrices , 1987, Journal of mathematical biology.
[27] B. Derrida. Random-Energy Model: Limit of a Family of Disordered Models , 1980 .
[28] Weinberger,et al. RNA folding and combinatory landscapes. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[29] Ray Templeton. ‘Public domain’ software , 1983 .
[30] Kaizhong Zhang,et al. Comparing multiple RNA secondary structures using tree comparisons , 1990, Comput. Appl. Biosci..
[31] T. Koornwinder,et al. Krawtchouk polynomials, a unification of two different group theoretic interpretations : (preprint) , 1982 .
[32] E. Szathmáry,et al. Four letters in the genetic alphabet: a frozen evolutionary optimum? , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[33] A. Bray,et al. Metastable states in spin glasses , 1980 .
[34] E D Weinberger,et al. Why some fitness landscapes are fractal. , 1993, Journal of theoretical biology.
[35] R. Palmer,et al. Solution of 'Solvable model of a spin glass' , 1977 .
[36] I. Chavel. Eigenvalues in Riemannian geometry , 1984 .
[37] K. Binder,et al. Spin glasses: Experimental facts, theoretical concepts, and open questions , 1986 .
[38] R. Voss. Characterization and Measurement of Random Fractals , 1986 .
[39] A A Mironov,et al. A kinetic approach to the prediction of RNA secondary structures. , 1985, Journal of biomolecular structure & dynamics.
[40] Eugene L. Lawler,et al. The Traveling Salesman Problem: A Guided Tour of Combinatorial Optimization , 1985 .
[41] Jacobus H. van Lint,et al. Introduction to Coding Theory , 1982 .
[42] N. Biggs. Algebraic Graph Theory , 1974 .
[43] P. L. Dobruschin. The Description of a Random Field by Means of Conditional Probabilities and Conditions of Its Regularity , 1968 .
[44] Peter J. Cameron,et al. Designs, graphs, codes, and their links , 1991 .
[45] H. Wielandt,et al. Finite Permutation Groups , 1964 .
[46] D. Cvetkovic,et al. Spectra of Graphs: Theory and Applications , 1997 .
[47] G. Sabidussi. Vertex-transitive graphs , 1964 .
[48] M. Fisher. On hearing the shape of a drum , 1966 .
[49] M. Kac. Can One Hear the Shape of a Drum , 1966 .
[50] D. Turner,et al. Improved free-energy parameters for predictions of RNA duplex stability. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[51] David Sankoff,et al. RNA secondary structures and their prediction , 1984 .
[52] Peter F. Stadler,et al. Canonical Approximation of Landscapes , 1994 .
[53] A. Perelson,et al. Protein evolution on partially correlated landscapes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[54] F. Spitzer. Markov Random Fields and Gibbs Ensembles , 1971 .
[55] C. T. Benson,et al. On hearing the shape of combinatorial drums , 1972 .
[56] Jerrold R. Griggs,et al. Algorithms for Loop Matchings , 1978 .
[57] Correlation structure of the landscape of the graph-bipartitioning problem , 1992 .
[58] S. Kirkpatrick,et al. Solvable Model of a Spin-Glass , 1975 .
[59] M. Mézard,et al. Spin Glass Theory and Beyond , 1987 .
[60] P. Stadler,et al. The landscape of the traveling salesman problem , 1992 .
[61] P. Schuster,et al. Generic properties of combinatory maps: neutral networks of RNA secondary structures. , 1997, Bulletin of mathematical biology.
[62] P. Schuster,et al. Statistics of landscapes based on free energies, replication and degradation rate constants of RNA secondary structures , 1991 .
[63] Richard A. Brualdi,et al. Combinatorial matrix theory , 1991 .
[64] Flyvbjerg,et al. Coevolution in a rugged fitness landscape. , 1992, Physical review. A, Atomic, molecular, and optical physics.
[65] A. Perelson,et al. Evolutionary walks on rugged landscapes , 1991 .
[66] Michael S. Waterman,et al. On some new sequences generalizing the Catalan and Motzkin numbers , 1979, Discret. Math..
[67] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[68] Bernard Derrida,et al. The random energy model , 1980 .
[69] E. Tanaka,et al. A unified view on tree metrics , 1988 .
[70] MARCEL J. E. GOLAY,et al. Sieves for low autocorrelation binary sequences , 1977, IEEE Trans. Inf. Theory.
[71] C. Gardiner. Handbook of Stochastic Methods , 1983 .
[72] D. G. Higman. Intersection matrices for finite permutation groups , 1967 .
[73] P. Schuster,et al. Algorithm independent properties of RNA secondary structure predictions , 1996, European Biophysics Journal.
[74] Richard W. Hamming,et al. Error detecting and error correcting codes , 1950 .
[75] A. Bray,et al. Metastable states in spin glasses with short-ranged interactions , 1981 .
[76] R. Bland,et al. Large travelling salesman problems arising from experiments in X-ray crystallography: A preliminary report on computation , 1989 .
[77] P. Stadler,et al. Anisotropy in fitness landscapes. , 1993, Journal of theoretical biology.
[78] Brian W. Kernighan,et al. An Effective Heuristic Algorithm for the Traveling-Salesman Problem , 1973, Oper. Res..
[79] Willard Miller,et al. Symmetry and Separation of Variables , 1977 .
[80] F. C. Piper,et al. FINITE GROUPS OF AUTOMORPHISMS , 1974 .
[81] Samuel Karlin,et al. A First Course on Stochastic Processes , 1968 .
[82] Arthur T. White,et al. Permutation Groups and Combinatorial Structures , 1979 .
[83] G. Grimmett. A THEOREM ABOUT RANDOM FIELDS , 1973 .
[84] Paolo M. Soardi,et al. Potential Theory on Infinite Networks , 1994 .
[85] Walter Fontana,et al. Fast folding and comparison of RNA secondary structures , 1994 .
[86] Søren Brunak,et al. A Travelling Salesman Approach to Protein Conformation , 1989, Complex Syst..
[87] John P. Moussouris. Gibbs and Markov random systems with constraints , 1974 .
[88] Peter F. Stadler,et al. Linear Operators on Correlated Landscapes , 1994 .
[89] F. Spitzer. Principles Of Random Walk , 1966 .
[90] P. Diaconis,et al. Generating a random permutation with random transpositions , 1981 .
[91] C. A. Macken,et al. Protein evolution on rugged landscapes. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[92] J. Besag. Spatial Interaction and the Statistical Analysis of Lattice Systems , 1974 .
[93] Paulien Hogeweg,et al. Energy directed folding of RNA sequences , 1984, Nucleic Acids Res..
[94] Peter F. Stadler,et al. Random walks and orthogonal functions associated with highly symmetric graphs , 1995, Discret. Math..
[95] B. Derrida. Random-energy model: An exactly solvable model of disordered systems , 1981 .
[96] A. Schwenk. COMPUTING THE CHARACTERISTIC POLYNOMIAL OF A GRAPH. , 1974 .
[97] I. G. MacDonald,et al. Symmetric functions and Hall polynomials , 1979 .
[98] George A. Baker,et al. Drum Shapes and Isospectral Graphs , 1966 .
[99] M. Mézard,et al. Replicas and optimization , 1985 .
[100] Eugene L. Lawler,et al. Traveling Salesman Problem , 2016 .
[101] Peter F. Stadler,et al. Error Thresholds on Correlated Fitness Landscapes , 1993 .
[102] E. Gardner,et al. Metastable states of a spin glass chain at 0 temperature , 1986 .
[103] Peter F. Stadler,et al. Landscapes: Complex Optimization Problems and Biopolymer Structures , 1994, Comput. Chem..
[104] R. H. J. M. Otten,et al. The Annealing Algorithm , 1989 .
[105] L. Lovász. Spectra of graphs with transitive groups , 1975 .
[106] Jean-Pierre Serre,et al. Linear representations of finite groups , 1977, Graduate texts in mathematics.
[107] F. MacWilliams,et al. The Theory of Error-Correcting Codes , 1977 .
[108] P. Schuster,et al. A computer model of evolutionary optimization. , 1987, Biophysical chemistry.
[109] Peter F. Stadler,et al. Correlation in Landscapes of Combinatorial Optimization Problems , 1992 .
[110] S. Kauffman,et al. Towards a general theory of adaptive walks on rugged landscapes. , 1987, Journal of theoretical biology.
[111] F. Tanaka,et al. Analytic theory of the ground state properties of a spin glass. II. XY spin glass , 1980 .
[112] A. Mironov,et al. RNA secondary structure formation during transcription. , 1986, Journal of biomolecular structure & dynamics.
[113] D. L. Powers,et al. The walk partition and colorations of a graph , 1982 .