Inferring Transcriptional Modules from Microarray and ChIP-Chip Data Using Penalized Matrix Decomposition
暂无分享,去创建一个
[1] Christian J Stoeckert,et al. Clustering of genes into regulons using integrated modeling-COGRIM , 2007, Genome Biology.
[2] Brendan J. Frey,et al. Multi-way clustering of microarray data using probabilistic sparse matrix factorization , 2005, ISMB.
[3] Steven J. M. Jones,et al. Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.
[4] Ujjwal Maulik,et al. Towards improving fuzzy clustering using support vector machine: Application to gene expression data , 2009, Pattern Recognit..
[5] D. Koller,et al. A module map showing conditional activity of expression modules in cancer , 2004, Nature Genetics.
[6] David Botstein,et al. GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes , 2004, Bioinform..
[7] Russ B. Altman,et al. Missing value estimation methods for DNA microarrays , 2001, Bioinform..
[8] Kathleen Marchal,et al. Inferring Transcriptional Networks by Mining 'Omics' Data , 2006 .
[9] J. Winderickx,et al. Inferring transcriptional modules from ChIP-chip, motif and microarray data , 2006, Genome Biology.
[10] Jun Zhang,et al. Discovering the transcriptional modules using microarray data by penalized matrix decomposition , 2011, Comput. Biol. Medicine.
[11] Chiara Sabatti,et al. Network component analysis: Reconstruction of regulatory signals in biological systems , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[13] W. Wong,et al. Functional annotation and network reconstruction through cross-platform integration of microarray data , 2005, Nature Biotechnology.
[14] D. Cavalieri,et al. Bioinformatic methods for integrating whole-genome expression results into cellular networks. , 2005, Drug discovery today.
[15] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[16] R. Tibshirani,et al. A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. , 2009, Biostatistics.
[17] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[18] Nicola J. Rinaldi,et al. Computational discovery of gene modules and regulatory networks , 2003, Nature Biotechnology.
[19] De-Shuang Huang,et al. Independent component analysis-based penalized discriminant method for tumor classification using gene expression data , 2006, Bioinform..
[20] Elmer Andrés Fernández,et al. Improving cluster visualization in self-organizing maps: Application in gene expression data analysis , 2007, Comput. Biol. Medicine.