DeepNeuron: an open deep learning toolbox for neuron tracing
暂无分享,去创建一个
Zhi Zhou | Hanchuan Peng | Fuhui Long | Hsien-Chi Kuo | Hanchuan Peng | Fuhui Long | Zhi Zhou | H. Kuo
[1] Hanchuan Peng,et al. Deep models for brain EM image segmentation: novel insights and improved performance , 2016, Bioinform..
[2] Hanchuan Peng,et al. Automatic tracing of ultra-volumes of neuronal images , 2016, Nature Methods.
[3] Yuan Liu,et al. The DIADEM and Beyond , 2011, Neuroinformatics.
[4] Shaoqun Zeng,et al. High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level , 2016, Nature Communications.
[5] Giorgio A. Ascoli,et al. Automated reconstruction of neuronal morphology: An overview , 2011, Brain Research Reviews.
[6] Geoffrey E. Hinton,et al. ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.
[7] Jinhyun Kim,et al. neuTube 1.0: A New Design for Efficient Neuron Reconstruction Software Based on the SWC Format 123 , 2015, eNeuro.
[8] Hanchuan Peng,et al. Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis , 2014, Nature Communications.
[9] Shih-Fu Chang,et al. Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking , 2012, Front. Neural Circuits.
[10] Tianming Liu,et al. SmartTracing: self-learning-based Neuron reconstruction , 2015, Brain Informatics.
[11] Hanchuan Peng,et al. Extensible visualization and analysis for multidimensional images using Vaa3D , 2014, Nature Protocols.
[12] E Meijering,et al. Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[13] Yann LeCun,et al. Learning a similarity metric discriminatively, with application to face verification , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).
[14] Yizong Cheng,et al. Mean Shift, Mode Seeking, and Clustering , 1995, IEEE Trans. Pattern Anal. Mach. Intell..
[15] Hanchuan Peng,et al. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets , 2010, Nature Biotechnology.
[16] Guigang Zhang,et al. Deep Learning , 2016, Int. J. Semantic Comput..
[17] Yann LeCun,et al. Signature Verification Using A "Siamese" Time Delay Neural Network , 1993, Int. J. Pattern Recognit. Artif. Intell..
[18] Sean L. Hill,et al. BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images , 2015, Neuron.
[19] Julio Chapeton,et al. Active learning of neuron morphology for accurate automated tracing of neurites , 2014, Front. Neuroanat..
[20] Badrinath Roysam,et al. The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions , 2011, Neuroinformatics.
[21] Shuiwang Ji,et al. Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction , 2017, IEEE Transactions on Medical Imaging.
[22] J. Douglas Armstrong,et al. Bioinformatics Applications Note Systems Biology Simple Neurite Tracer: Open Source Software for Reconstruction, Visualization and Analysis of Neuronal Processes , 2022 .
[23] Eugene W. Myers,et al. BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies , 2015, Neuroinformatics.