Hanchuan Peng

发表

A hierarchical distributed genetic algorithm for image segmentation

Hanchuan Peng, Fuhui Long, Zheru Chi, 2000, Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512).

Minimum Redundancy Feature Selection from Microarray Gene Expression Data

Chris H. Q. Ding, Hanchuan Peng, C. Ding, 2005, J. Bioinform. Comput. Biol..

Approaching the post nonlinearity of blind mixtures by hybrid neural network

Hanchuan Peng, Zheru Chi, 1999, IJCNN'99. International Joint Conference on Neural Networks. Proceedings (Cat. No.99CH36339).

Feature selection: We've barely scratched the surface

Huan Liu, Hanchuan Peng, Fuhui Long, 2005 .

Interactive exemplar-based segmentation toolkit for biomedical image analysis

Zhi Zhou, Tianming Liu, Hanchuan Peng, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Bioimage informatics: a new area of engineering biology

Hanchuan Peng, Hanchuan Peng, 2008, Bioinform..

Structure search and stability enhancement of Bayesian networks

Chris H. Q. Ding, Hanchuan Peng, C. Ding, 2003, Third IEEE International Conference on Data Mining.

Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching

Eugene W. Myers, Hanchuan Peng, Ting Zhao, 2010, MICCAI.

An open-source VAA3D plugin for real-time 3D visualization of terabyte-sized volumetric images

Hanchuan Peng, Giulio Iannello, Alessandro Bria, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Counting cells in 3D confocal images based on discriminative models

Hanchuan Peng, Jie Zhou, 2011, BCB '11.

A survey of GPU-based acceleration techniques in MRI reconstructions.

Dong Liang, Yuchou Chang, Hanchuan Peng, 2018, Quantitative imaging in medicine and surgery.

Ensemble Neuron Tracer for 3D Neuron Reconstruction

Zhi Zhou, Hanchuan Peng, Ching-Wei Wang, 2017, Neuroinformatics.

Document Image Recognition Based on Template Matching of Component Block Projections

Hanchuan Peng, Fuhui Long, Zheru Chi, 2002, IEEE Trans. Pattern Anal. Mach. Intell..

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis

Hanchuan Peng, Fuhui Long, Giulio Iannello, 2014, Nature Communications.

AUTOMATIC SEGMENTATION OF NUCLEI IN 3D MICROSCOPY IMAGES OF C.ELEGANS

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction

Hanchuan Peng, David Dagan Feng, Siqi Liu, 2018, Neuroinformatics.

Minimum redundancy feature selection from microarray gene expression data

Chris H. Q. Ding, Hanchuan Peng, C. Ding, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

Simultaneous recognition and segmentation of cells: application in C.elegans

Xiao Liu, Eugene W. Myers, Hanchuan Peng, 2011, Bioinform..

Comparing in situ mRNA expression patterns of drosophila embryos

Eugene W. Myers, Hanchuan Peng, E. Myers, 2004, RECOMB.

Global analysis of gene expression and projection target correlations in the mouse brain

Hanchuan Peng, Shuiwang Ji, Tao Zeng, 2015, Brain Informatics.

BIOCAT: a pattern recognition platform for customizable biological image classification and annotation

Hanchuan Peng, Jie Zhou, Bing Ye, 2013, BMC Bioinformatics.

Exploring morphological motifs for a single neuron based on multiple 3D reconstructions

Jian Yang, Hanchuan Peng, Ning Zhong, 2018, bioRxiv.

Using sparse trace neural network to extract temporal-spatial invariance

Hanchuan Peng, Yu Wei, Lifeng Sha, 1998, 1998 IEEE International Joint Conference on Neural Networks Proceedings. IEEE World Congress on Computational Intelligence (Cat. No.98CH36227).

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

Hanchuan Peng, Giulio Iannello, Alessandro Bria, 2016, Nature Methods.

TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections

Zhi Zhou, Hanchuan Peng, Xiaoxiao Liu, 2015, Neuroinformatics.

Fast assembling of neuron fragments in serial 3D sections

Tianming Liu, Hanchuan Peng, Hanbo Chen, 2017, Brain Informatics.

Visualization and Analysis of 3D Microscopic Images

Hanchuan Peng, Fuhui Long, Jianlong Zhou, 2012, PLoS Comput. Biol..

Image data mining of fruitfly gene expression patterns

Hanchuan Peng, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Automated image computing reshapes computational neuroscience

Hanchuan Peng, Giorgio A. Ascoli, Badrinath Roysam, 2013, BMC Bioinformatics.

Bayesian Clustering of Vector Variables for Association Determination

Hanchuan Peng, Hanchuan Peng, 2002 .

DeepNeuron: an open deep learning toolbox for neuron tracing

Zhi Zhou, Hanchuan Peng, Fuhui Long, 2018, Brain Informatics.

Document image matching based on component blocks

Wan-Chi Siu, Hanchuan Peng, Fuhui Long, 2000, Proceedings 2000 International Conference on Image Processing (Cat. No.00CH37101).

Neuron crawler: An automatic tracing algorithm for very large neuron images

Zhi Zhou, Hanchuan Peng, Staci A. Sorensen, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology

Hanchuan Peng, Hongkui Zeng, Michael Hawrylycz, 2017, Scientific Reports.

LittleQuickWarp: an ultrafast image warping tool.

Hanchuan Peng, Lei Qu, Hanchuan Peng, 2015, Methods.

Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images

Yujie Li, Meng Li, Jinglei Lv, 2017, Neuroinformatics.

Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2011, Neuroinformatics.

TeraVR Empowers Precise Reconstruction of Complete 3-D Neuronal Morphology in the Whole Brain

Hanchuan Peng, Yike Guo, Ning Zhong, 2019 .

Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking

Weidong Cai, Hanchuan Peng, Siqi Liu, 2017, bioRxiv.

Mapping of microbial pathways through constrained mapping of orthologous genes

Ying Xu, Hanchuan Peng, Victor Olman, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Bayesian clustering methods for morphological analysis of MR images

Christos Davatzikos, Hanchuan Peng, Edward Herskovits, 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

AUTOMATIC ANNOTATION OF BIOLOGICAL IMAGES

Jie Zhou, Hanchuan Peng, Hanchuan Peng, 2009 .

Document image template matching based on component block list

Wan-Chi Siu, Hanchuan Peng, Fuhui Long, 2001, Pattern Recognit. Lett..

Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans

Xiao Liu, Hanchuan Peng, Fuhui Long, 2013, Bioinform..

Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding

Yujie Li, Jinglei Lv, Tianming Liu, 2016, MICCAI.

Clustering gene expression patterns of fly embryos

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

3-D Registration of Biological Images and Models: Registration of microscopic images and its uses in segmentation and annotation

Hanchuan Peng, Fuhui Long, Lei Qu, 2015, IEEE Signal Processing Magazine.

Imaging informatics for personalised medicine: applications and challenges

Xiaobo Zhou, Tianming Liu, Hanchuan Peng, 2009, Int. J. Funct. Informatics Pers. Medicine.

VANO: a volume-object image annotation system

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2009, Bioinform..

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2015, Neuroinformatics.

Extensible visualization and analysis for multidimensional images using Vaa3D

Hanchuan Peng, Fuhui Long, Giulio Iannello, 2014, Nature Protocols.

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

Hanchuan Peng, Hang Xiao, Hanchuan Peng, 2013, Bioinform..

Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking

Sidong Liu, Hanchuan Peng, David Dagan Feng, 2016, Neuroinformatics.

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2011, Neuroinformatics.

Triple-Crossing 2.5D Convolutional Neural Network for Detecting Neuronal Arbours in 3D Microscopic Images

Hanchuan Peng, Siqi Liu, Yang Song, 2017, MLMI@MICCAI.

Automatic recognition and annotation of gene expression patterns of fly embryos

Hanchuan Peng, Jie Zhou, Hanchuan Peng, 2007, Bioinform..

Acquiring and calibrating a high-dynamic-range natural image database

Hanchuan Peng, Fuhui Long, 2005, IS&T/SPIE Electronic Imaging.

Bioimage informatics: a new category in Bioinformatics

Alfonso Valencia, Alex Bateman, Hanchuan Peng, 2012, Bioinform..

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

Hanchuan Peng, Zongcai Ruan, Deniz Atasoy, 2010, Bioinform..

Cell phenotype classification based on 3D cell image analysis

Hanchuan Peng, Fuhui Long, Damir Sudar, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Anisotropic path searching for automatic neuron reconstruction

Eugene W. Myers, Hanchuan Peng, Ting Zhao, 2011, Medical Image Anal..

Deep models for brain EM image segmentation: novel insights and improved performance

Hanchuan Peng, Shuiwang Ji, Ahmed Fakhry, 2016, Bioinform..

Finding cliques in protein interaction networks via transitive closure of a weighted graph

Chris H. Q. Ding, Hanchuan Peng, Xiaofeng He, 2005, BIOKDD.

Straightening Caenorhabditis elegans images

Xiao Liu, Eugene W. Myers, Hanchuan Peng, 2007, Bioinform..

Automatic content extraction of filled-form images based on clustering component block projection vectors

Hanchuan Peng, Fuhui Long, Xiaofeng He, 2003, IS&T/SPIE Electronic Imaging.

3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo

Hanchuan Peng, Hongkui Zeng, Ulf Knoblich, 2015, Scientific Reports.

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

Hanchuan Peng, Fuhui Long, Julie H. Simpson, 2010, Nature Biotechnology.

Automatic tracing of ultra-volumes of neuronal images

Hanchuan Peng, Erik Meijering, Michael Hawrylycz, 2016, Nature Methods.

Corrigendum: Biological imaging software tools

Anne L Plant, Hanchuan Peng, Maryann E Martone, 2012, Nature Methods.

3D neuron tip detection in volumetric microscopy images using an adaptive ray-shooting model

Hanchuan Peng, Min Liu, Weixun Chen, 2018, Pattern Recognit..

Design and implementation of multi-signal and time-varying neural reconstructions

Hanchuan Peng, Hanbo Chen, Erik De Schutter, 2018, Scientific Data.

Evolving Feature Selection

Chris H. Q. Ding, Hanchuan Peng, Fuhui Long, 2005, IEEE Intell. Syst..

Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing

Zihao Tang, Hanchuan Peng, Siqi Liu, 2017, 2017 IEEE International Conference on Computer Vision Workshops (ICCVW).

From DIADEM to BigNeuron

Hanchuan Peng, Giorgio A. Ascoli, Erik H. W. Meijering, 2015, Neuroinformatics.

Reconstruction of 3D neuron morphology using Rivulet back-tracking

Sidong Liu, Hanchuan Peng, David Dagan Feng, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Toward automatic annotation of in situ mRNA expression patterns of drosophila embryos

Hanchuan Peng, Jie Zhou, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Image categorization based on clustering spatial frequency maps

Hanchuan Peng, Fuhui Long, David Dagan Feng, 2003, IS&T/SPIE Electronic Imaging.

STRAIGHTENING WORM IMAGES

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images

Heng Wang, Hanchuan Peng, Weidong Cai, 2018, 2018 Digital Image Computing: Techniques and Applications (DICTA).

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures

Zhi Zhou, Hanchuan Peng, Hongkui Zeng, 2014, Neuroinformatics.

Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques

Hui Xiong, Chris H. Q. Ding, Hanchuan Peng, 2006, Int. J. Data Min. Bioinform..

A Multiscale Ray-Shooting Model for Termination Detection of Tree-Like Structures in Biomedical Images

Hanchuan Peng, Min Liu, Chao Wang, 2019, IEEE Transactions on Medical Imaging.

Automatic Recognition of Cells (ARC) for 3D Images of C. elegans

Xiao Liu, Eugene W. Myers, Hanchuan Peng, 2008, RECOMB.

A Bayesian Learning Algorithm of Discrete Variables for Automatically Mining Irregular Features of Pattern Images

Hanchuan Peng, Fuhui Long, Hanchuan Peng, 2001, MDM/KDD.

Trace regulation techniques for feature extraction

Xiao Sun, Hanchuan Peng, Lifeng Sha, 1998, ICSP '98. 1998 Fourth International Conference on Signal Processing (Cat. No.98TH8344).

A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems

Hanchuan Peng, Lei Qu, Hanchuan Peng, 2010, Bioinform..

Energy function for learning invariance in multilayer perceptron

Hanchuan Peng, Yu Wei, Lifeng Sha, 1998 .

Biological imaging software tools

B. S. Manjunath, Anne L Plant, Nico Stuurman, 2012, Nature Methods.

Extracting Semantic Video Objects

Wan-Chi Siu, Hanchuan Peng, Fuhui Long, 2001, IEEE Computer Graphics and Applications.

A HPC infrastructure for processing and visualizing neuro-anatomical images obtained by Confocal Light Sheet Microscopy

Paolo Frasconi, Hanchuan Peng, Giulio Iannello, 2014, 2014 International Conference on High Performance Computing & Simulation (HPCS).

A Bayesian morphometry algorithm

Christos Davatzikos, Hanchuan Peng, Edward Herskovits, 2004, IEEE Transactions on Medical Imaging.

FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree

Xiaoyang Liu, Zhijiang Wan, Ning Zhong, 2018, Neuroinformatics.

Automatic 3D neuron tracing using all-path pruning

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2011, Bioinform..

Reconstructing the brain: from image stacks to neuron synthesis

Hanchuan Peng, Michael Hawrylycz, Sean L. Hill, 2016, Brain Informatics.

Data-driven decomposition for multi-class classification

Ching Y. Suen, Hanchuan Peng, Jie Zhou, 2008, Pattern Recognit..

SmartTracing: self-learning-based Neuron reconstruction

Tianming Liu, Hanchuan Peng, Hanbo Chen, 2015, Brain Informatics.

Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets

Hanchuan Peng, Fuhui Long, 2011, RECOMB.

Brain Informatics and Health: 8th International Conference, BIH 2015, London, UK, August 30 - September 2, 2015. Proceedings

Yike Guo, Hanchuan Peng, Karl Friston, 2015 .

Image enhancement to leverage the 3D morphological reconstruction of single-cell neurons

Hanchuan Peng, Xuan Zhao, Liya Ding, 2021, Bioinform..

Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2009, Cell.

Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience

Hanchuan Peng, Fuhui Long, Joseph C. Pearson, 2014, Development.

Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy

Hanchuan Peng, Francesco Saverio Pavone, Giulio Iannello, 2013, Journal of visualized experiments : JoVE.

Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Hanchuan Peng, Fuhui Long, Damir Sudar, 2006, BMC Cell Biology.

Classification of electrophysiological and morphological types in mouse visual cortex

Brian R. Lee, Christof Koch, Hanchuan Peng, 2018, bioRxiv.

Grand Challenges for Global Brain Sciences

Qingming Luo, Hanchuan Peng, Rafael Yuste, 2016 .

Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking

Hanchuan Peng, Idan Segev, Uygar Sümbül, 2020, Neuron.

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

Brian R. Lee, Christof Koch, Hanchuan Peng, 2019, Nature Neuroscience.

Data Mining Straightening C . elegans Images

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2007 .

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells

Brian R. Lee, Hanchuan Peng, Anton Arkhipov, 2020, Cell.

mGRASP enables mapping mammalian synaptic connectivity with light microscopy

Hanchuan Peng, Yang Yu, Jeffrey C Magee, 2011, Nature Methods.

A Semi-Parametric Hybrid Neural Model for Nonlinear Blind Signal Separation

Wan-Chi Siu, Hanchuan Peng, Zheru Chi, 2000, Int. J. Neural Syst..

Wiring economy can account for cell body placement across species and brain areas

Hanchuan Peng, Dmitri B. Chklovskii, Marta Rivera-Alba, 2014, Current Biology.

Toward an integrated classification of neuronal cell types: morphoelectric and transcriptomic characterization of individual GABAergic cortical neurons

Brian R. Lee, Hong Gu, Christof Koch, 2020, bioRxiv.

Discover mouse gene coexpression landscapes using dictionary learning and sparse coding

Jinglei Lv, Hanchuan Peng, Xi Jiang, 2017, Brain Structure and Function.

Whole-neuron synaptic mapping reveals local balance between excitatory and inhibitory synapse organization

Hanchuan Peng, Idan Segev, Uygar Sümbül, 2018, bioRxiv.

Development of Multiscale Biological Image Data Analysis: Review of 2006 International Workshop on Multiscale Biological Imaging, Data Mining and Informatics, Santa Barbara, USA (BII06)

Hanchuan Peng, Manfred Auer, Ambuj Singh, 2007, BMC Cell Biology.

Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types

Shaoqun Zeng, Qingming Luo, Christof Koch, 2019, bioRxiv.