Ge Tan

发表

Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation

B. Lenhard, N. Harmston, Elizabeth Ing-Simmons, 2017, Nature Communications.

Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference

Matthieu Muffato, Manuel Gil, Christophe Dessimoz, 2015, Systematic biology.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Shubhada R. Kulkarni, A. Sandelin, 2017, Nucleic acids research.

JASPAR 2020: update of the open-access database of transcription factor binding profiles

Phillip A. Richmond, Robin van der Lee, A. Sandelin, 2019, Nucleic Acids Res..

An Information and Combinatorial Theories-based Supervised Learning Framework for Integrative Inference and Analysis of Genetic Regulatory Networks ∗

Bairong Shen, Su-shing Chen, Binhua Tang, 2009 .

Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

Mohammad M. Karimi, Bruce J. Bolt, Juan J. Caceres, 2018, Nature Communications.

CNEr: A toolkit for exploring extreme noncoding conservation

B. Lenhard, D. Polychronopoulos, Ge Tan, 2019, bioRxiv.

Tracking Subclonal Mutation Frequencies Throughout Lymphomagenesis Identifies Cancer Drivers in Mouse Models of Lymphoma

Juan J. Caceres, A. Paccanaro, K. Naresh, 2017, bioRxiv.

update of the open-access database of transcription factor binding profiles JASPAR 2020: update of the open-access database of transcription factor binding proﬁles

Robin van der Lee, A. Sandelin, W. Wasserman, 2022 .

Conserved non-coding elements: developmental gene regulation meets genome organization

Boris Lenhard, Dimitris Polychronopoulos, Ge Tan, 2017, Nucleic acids research.

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Chih-Yu Chen, 2015, Nucleic Acids Res..

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2017, Nucleic acids research.

Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation

B. Lenhard, N. Harmston, Elizabeth Ing-Simmons, 2017, Nature Communications.

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Chih-Yu Chen, 2013, Nucleic Acids Res..

TFBSTools: an R/bioconductor package for transcription factor binding site analysis

Ge Tan, Boris Lenhard, B. Lenhard, 2016, Bioinform..

Topologically associated domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation

B. Lenhard, N. Harmston, Elizabeth Ing-Simmons, 2016, bioRxiv.

Structure-based prediction of the effects of a missense variant on protein stability

Bairong Shen, Mauno Vihinen, Yang Yang, 2012, Amino Acids.

Structure-based prediction of the effects of a missense variant on protein stability

Bairong Shen, M. Vihinen, Yang Yang, 2013, Amino Acids.

Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

Juan J. Caceres, Alberto Paccanaro, K. Naresh, 2018, Nature Communications.

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern

Bairong Shen, Su-Shing Chen, Binhua Tang, 2010, BMC Systems Biology.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Robin van der Lee, Shubhada R. Kulkarni, 2017, Nucleic Acids Res..

update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Robin van der Lee, A. Sandelin, 2017 .

Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks

Manuel Gil, Christophe Dessimoz, Nick Goldman, 2015, Proceedings of the National Academy of Sciences.

update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Robin van der Lee, A. Sandelin, 2017 .

a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, A. Sandelin, W. Wasserman, 2015 .

a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, A. Sandelin, W. Wasserman, 2015 .