J. Foster

发表

Using genetic programming to approximate maximum clique

T. Soule, J. Foster, J. Dickinson, 1996 .

Genetic and Evolutionary Computation — GECCO 2003

Julian F. Miller, Mark Harman, Kathryn A. Dowsland, 2003, Lecture Notes in Computer Science.

Guidelines: From artificial evolution to computational evolution: a research agenda

J. Miller, J. Foster, W. Banzhaf, 2006, Nature Reviews Genetics.

Computational genetics: Evolutionary computation

J. Foster, 2001, Nature Reviews Genetics.

Byte Code Genetic Programming

J. Foster, D. Frincke, Brad Harvey, 1998 .

Machine Learning Techniques Accurately Classify Microbial Communities by Bacterial Vaginosis Characteristics

J. Foster, Daniel Beck, 2014, PloS one.

Fault-Tolerant Hardware Through N-Version Genetic Programming

J. Foster, Kosuke Imamura, 2003 .

Relaxed Neighbor Joining: A Fast Distance-Based Phylogenetic Tree Construction Method

J. Foster, Jason Evans, L. Sheneman, 2006, Journal of Molecular Evolution.

MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes

J. Foster, L. Forney, S. Bent, 2007, Microbial Ecology.

From bioputing to bactoputing: computing with bacteria

O. Michel, J. Foster, G. Beslon, 2008 .

Application of Ecological Network Theory to the Human Microbiome

James A. Foster, Stephen M. Krone, Larry J. Forney, 2008, Interdisciplinary perspectives on infectious diseases.

Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life

Jason H. Moore, James A. Foster, John Bunge, 2012, Briefings Bioinform..

Chapter 6 – Analyzing High-Throughput Microbial Amplicon Sequence Data Using Multiple Markers

J. Foster, I. Zhbannikov, 2018 .

Genetic Algorithms , and Hardness

J. Foster, B. Rylander, BART RYLANDER, 2002 .

Randomness and GA performance, revisited

Mark M. Meysenburg, J. Foster, 1999 .

Evolving Consensus Sequences with a Genetic Algorithm

J. Foster, Conrad Shyu, 2003 .

Gut microbial colonisation in premature neonates predicts neonatal sepsis

Paul Palumbo, James A Foster, Jason H. Moore, 2012, Archives of Disease in Childhood: Fetal and Neonatal Edition.

Pacific symposium on biocomputing 2011

C. Alkan, F. Hormozdiari, E. Eskin, 2011 .

GECCO ’14: Proceedings of the 2014 conference on Genetic and evolutionary computation

Julian Togelius, Christine Zarges, Hitoshi Iba, 2014 .

Category: Genetic Programming Title: Random Generator Quality and GP Performance

Mark M. Meysenburg, J. Foster, 1999 .

Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women

Zaid Abdo, Paul Joyce, James A Foster, 2007, The ISME Journal.

Estimating population diversity with CatchAll

James A. Foster, John Bunge, Sean Connolly, 2012, Bioinform..

Phylogenetics Clearcut : a fast implementation of relaxed neighbor joining

James A. Foster, Luke Sheneman, Jason Evans, 2006 .

Evolving Better Multiple Sequence Alignments

James A. Foster, Luke Sheneman, J. Foster, 2004, GECCO.

Multiple Sequence Alignment with Evolutionary Computation

James A. Foster, Conrad Shyu, Luke Sheneman, 2004, Genetic Programming and Evolvable Machines.

Evolving Guide Trees in Progressive Multiple Sequence Alignment

James A. Foster, Luke Sheneman, J. Foster, 2003 .

- 1-Eliminating Dynamic Programming Bias in Multiple Sequence Alignment Algorithms

J. Foster, L. Sheneman, 2007 .

Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity

J. Foster, J. Sullivan, S. Kembel, 2022, bioRxiv.

Bacterial diversity in a glacier foreland of the high Arctic

Zaid Abdo, John Bunge, Jacques Ravel, 2010, Molecular ecology.

Estimation of viral richness from shotgun metagenomes using a frequency count approach

John Bunge, James A Foster, J. Foster, 2013, Microbiome.

The evolution of size and shape

Riccardo Poli, William B. Langdon, James A. Foster, 1999 .

Defining and simulating open-ended novelty: requirements, guidelines, and challenges

Susan Stepney, Barry McMullin, Vinicius Veloso de Melo, 2016, Theory in Biosciences.

Genetic and Evolutionary Computation — GECCO 2003

J. van Leeuwen, Jan van Leeuwen, Mark Harman, 2003, Lecture Notes in Computer Science.

Microbial Communities as Experimental Units

Mitch D. Day, J. Foster, Daniel Beck, 2011, Bioscience.

Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity

J. Foster, J. Sullivan, S. Kembel, 2021, bioRxiv.

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

Franck Molina, Guillaume Hutzler, James A. Foster, 2011, Theory in Biosciences.

Improving the survivability of a simple evolved circuit through co-evolution

James A. Foster, Michael L. Harrison, J. Foster, 2004, Proceedings. 2004 NASA/DoD Conference on Evolvable Hardware, 2004..

Co-evolving Faults to Improve the Fault Tolerance of Sorting Networks

James A. Foster, Michael L. Harrison, J. Foster, 2004, EuroGP.

Computational complexity and the genetic algorithm

James A. Foster, Bart Rylander, J. Foster, 2001 .

Computer simulation of transposable element evolution: Random template and strict master models

J. Foster, H. Wichman, James E. Clough, 2004, Journal of Molecular Evolution.

Network analysis suggests a potentially ‘evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities

James A. Foster, Chengchen Zhang, Larry J. Forney, 2014, Scientific Reports.

Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis

J. Foster, Daniel Beck, 2015, BioData Mining.

Detecting bacterial vaginosis using machine learning

Rajeev Agrawal, James A. Foster, Yolanda S. Baker, 2014, ACM Southeast Regional Conference.

GA-based selection of vaginal microbiome features associated with bacterial vaginosis

James A. Foster, Gerry V. Dozier, Daniel Beck, 2014, GECCO.

mcaGUI: microbial community analysis R-Graphical User Interface (GUI)

James A. Foster, Daniel Beck, Xia Zhou, 2012, Bioinform..

MiCA : A Web-Based Tool for the Microbial Community Analysis Based on Terminal-Restriction Fragment Length Polymorphisms ( T-RFLP )

J. Foster, L. Forney, Conrad Shyu, 2002 .

MetAmp: combining amplicon data from multiple markers for OTU analysis

James A. Foster, Ilya Y. Zhbannikov, J. Foster, 2015, Bioinform..

N-Version Genetic Programming via Fault Masking

Terence Soule, James A. Foster, Robert B. Heckendorn, 2002, EuroGP.

The vaginal flora of healthy women is not always dominated by Lactobacillus species.

James A Foster, J. Foster, L. Forney, 2006, The Journal of infectious diseases.

Effects of Code Growth and Parsimony Pressure on Populations in Genetic Programming

Terence Soule, James A. Foster, T. Soule, 1998, Evolutionary Computation.

The test vector problem and limitations to evolving digital circuits

Axel W. Krings, James A. Foster, Kosuke Imamura, 2000, Proceedings. The Second NASA/DoD Workshop on Evolvable Hardware.

Representation and robustness for evolved sorting networks

J. Masner, J. Cavalieri, J. Frenzel, 1999, Proceedings of the First NASA/DoD Workshop on Evolvable Hardware.

Code growth in genetic programming

Terence Soule, John Dickinson, James A. Foster, 1996 .

A genetic algorithm for expert system rule generation

James A. Foster, John C. Determan, J. Foster, 2001 .

Towards Byte Code Genetic Programming

Deborah A. Frincke, James A. Foster, Brad Harvey, 1999, GECCO.

How random generator quality impacts genetic algorithm performance

James A. Foster, Mark M. Meysenburg, Duane McElvain, 2002 .

OTUbase: an R infrastructure package for operational taxonomic unit data

James A. Foster, Daniel Beck, Matt Settles, 2011, Bioinform..

Effects of code growth and parsimony pressure on populations in genetic programming.

J A Foster, T. Soule, J. Foster, 1998, Evolutionary computation.

SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching.

Samuel S. Hunter, Ilya Y Zhbannikov, Samuel S Hunter, 2013, Journal of data mining in genomics & proteomics.

SeqyClean: A Pipeline for High-throughput Sequence Data Preprocessing

James A. Foster, Samuel S. Hunter, Matthew L. Settles, 2017, BCB.

Seed: a user-friendly tool for exploring and visualizing microbial community data

James A. Foster, Daniel Beck, Christopher Dennis, 2014, Bioinform..

A Genetic Algorithm-specific Test Of Random Generator Quality

James A. Foster, Mark M. Meysenburg, Daniel Hoelting, 2002, GECCO.

Random generator quality and GP performance

James A. Foster, Mark M. Meysenburg, J. Foster, 1999 .

Estimating Population Diversity with Unreliable Low Frequency Counts

James A. Foster, John Bunge, Dankmar Böhning, 2012, Pacific Symposium on Biocomputing.

Using chaos in genetic algorithms

James A. Foster, J. Determan, J. Foster, 1999, Proceedings of the 1999 Congress on Evolutionary Computation-CEC99 (Cat. No. 99TH8406).

Applying machine learning techniques in detecting Bacterial Vaginosis

Rajeev Agrawal, James A. Foster, Yolanda S. Baker, 2014, 2014 International Conference on Machine Learning and Cybernetics.

Crossover Bias in Genetic Programming

Maarten Keijzer, James Foster, M. Keijzer, 2007, EuroGP.

Serial Analysis of the Gut and Respiratory Microbiome in Cystic Fibrosis in Infancy: Interaction between Intestinal and Respiratory Tracts and Impact of Nutritional Exposures

Jason W. Moore, J. H. Moore, M. L. Sogin, 2012, mBio.

Estimating the destructiveness of crossover on binary tree representations

James A. Foster, Luke Sheneman, J. Foster, 2006, GECCO.

Computational genetics: Evolutionary computation

J. Foster, 2001, Nature Reviews Genetics.

Removal bias: a new cause of code growth in tree based evolutionary programming

Terence Soule, James A. Foster, J. Foster, 1998, 1998 IEEE International Conference on Evolutionary Computation Proceedings. IEEE World Congress on Computational Intelligence (Cat. No.98TH8360).

Evolving Molecules for Drug Design Using Genetic Algorithms via Molecular Trees

James A. Foster, Gerard Kian-Meng Goh, J. Foster, 2000, GECCO.

Review: Discipulus: A Commercial Genetic Programming System

James A. Foster, J. Foster, 2001, Genetic Programming and Evolvable Machines.