Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators
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[1] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[2] Kumar Chellapilla,et al. Multiple sequence alignment using evolutionary programming , 1999, Proceedings of the 1999 Congress on Evolutionary Computation-CEC99 (Cat. No. 99TH8406).
[3] Lawrence Davis,et al. Adapting Operator Probabilities in Genetic Algorithms , 1989, ICGA.
[4] Gary B. Fogel,et al. Improvement of clustal-derived sequence alignments with evolutionary algorithms , 2003, The 2003 Congress on Evolutionary Computation, 2003. CEC '03..
[5] D. Higgins,et al. T-Coffee: A novel method for fast and accurate multiple sequence alignment. , 2000, Journal of molecular biology.
[6] Sandeep K. Gupta,et al. Improving the Practical Space and Time Efficiency of the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment , 1995, J. Comput. Biol..
[7] Moon-Jung Chung,et al. Multiple sequence alignment using simulated annealing , 1994, Comput. Appl. Biosci..
[8] Gary B. Fogel,et al. A Clustal alignment improver using evolutionary algorithms , 2002, Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat. No.02TH8600).
[9] Liisa Holm,et al. COFFEE: an objective function for multiple sequence alignments , 1998, Bioinform..
[10] D. Higgins,et al. SAGA: sequence alignment by genetic algorithm. , 1996, Nucleic acids research.
[11] Tao Jiang,et al. On the Complexity of Multiple Sequence Alignment , 1994, J. Comput. Biol..
[12] Olivier Poch,et al. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs , 1999, Bioinform..