Optimizing Property Codes in Protein Data Reveals Structural Characteristics

[1]  Isao Tokuda,et al.  Detecting synchronizations in an asymmetric vocal fold model from time series data. , 2005, Chaos.

[2]  H. Herzel,et al.  Functional analysis and secondary expression profiling of candidate genes deregulated in conjunction with oncogenic Ras signaling. , 2005, Advances in enzyme regulation.

[3]  J. Korbel,et al.  Compositional Asymmetries and Predicted Origins of Replication of the Saccharomyces Cerevisiae Genome , 2004 .

[4]  Nils Blüthgen,et al.  Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors , 2004, German Conference on Bioinformatics.

[5]  William R Taylor,et al.  Amino acid encoding schemes from protein structure alignments: multi-dimensional vectors to describe residue types. , 2002, Journal of theoretical biology.

[6]  U Eysholdt,et al.  Spatio-temporal analysis of irregular vocal fold oscillations: biphonation due to desynchronization of spatial modes. , 2001, The Journal of the Acoustical Society of America.

[7]  Jan O. Korbel,et al.  Combining frequency and positional information to predict transcription factor binding sites , 2001, Bioinform..

[8]  I Grosse,et al.  Statistical analysis of the DNA sequence of human chromosome 22. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  Hanspeter Herzel,et al.  Extracting information from cDNA arrays. , 2001, Chaos.

[10]  H. Herzel,et al.  Realistic modeling of cardiac arrhythmia , 2001 .

[11]  Christian W. Zemlin,et al.  A realistic and efficient model of excitation propagation in the human atria , 2001 .

[12]  H. Herzel,et al.  The harmonic-to-noise ratio applied to dog barks. , 2001, Journal of the Acoustical Society of America.

[13]  I R Titze,et al.  Irregular vocal-fold vibration--high-speed observation and modeling. , 2000, The Journal of the Acoustical Society of America.

[14]  D. Holste,et al.  Are Noncoding Sequences of Rickettsia prowazekii Remnants of ``Neutralized'' Genes? , 2000, Journal of Molecular Evolution.

[15]  S. Buldyrev,et al.  Species independence of mutual information in coding and noncoding DNA. , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[16]  Johannes Schuchhardt,et al.  Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites , 2000, Bioinform..

[17]  S V Buldyrev,et al.  Average mutual information of coding and noncoding DNA. , 2000, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

[18]  Applications of information theory to biology , 1999, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

[19]  Minoru Kanehisa,et al.  AAindex: Amino Acid index database , 2000, Nucleic Acids Res..

[20]  Hans Lehrach,et al.  Reliability of Microarray Data and Clustering , 2000, German Conference on Bioinformatics.

[21]  Jan O. Korbel,et al.  Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search , 2000, German Conference on Bioinformatics.

[22]  Andreas Ziehe,et al.  Artifact Reduction in Magnetoneurography Based on Time-Delayed Second Order Correlations , 1998 .

[23]  Hanspeter Herzel,et al.  10-11 bp periodicities in complete genomes reflect protein structure and DNA folding , 1999, Bioinform..

[24]  Hanspeter Herzel,et al.  Quantifying correlations in pitch‐ and amplitude contours , 1999 .

[25]  Reinhold Orglmeister,et al.  SIMULATIONS OF VOCAL FOLD VIBRATIONS WITH AN ANALOG CIRCUIT , 1999 .

[26]  W. Fitch,et al.  Modeling the role of nonhuman vocal membranes in phonation. , 1999, The Journal of the Acoustical Society of America.

[27]  Stephen J. Wright,et al.  Numerical Optimization , 2018, Fundamental Statistical Inference.

[28]  Hanspeter Herzel How to Quantify 'Small-World Networks'? , 1998 .

[29]  U Zwiener,et al.  Nonlinear coordination of cardiovascular autonomic control. , 1998, IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society.

[30]  H. Herzel,et al.  Analyzing entrainment of heartbeat and respiration with surrogates , 1998, IEEE Engineering in Medicine and Biology Magazine.

[31]  E N Trifonov,et al.  Sequence periodicity in complete genomes of archaea suggests positive supercoiling. , 1998, Journal of biomolecular structure & dynamics.

[32]  Andreas Ziehe,et al.  TDSEP — an efficient algorithm for blind separation using time structure , 1998 .

[33]  Hanspeter Herzel,et al.  Bifurcations in a nonlinear model of the baroreceptor-cardiac reflex , 1998 .

[34]  D. Holste,et al.  Bayes' estimators of generalized entropies , 1998 .

[35]  H Herzel,et al.  Correlations in protein sequences and property codes. , 1998, Journal of theoretical biology.

[36]  Hanspeter Herzel,et al.  Interpreting correlations in biosequences , 1998 .

[37]  H. Herzel,et al.  Measuring Correlations in Protein Sequences , 1998 .

[38]  H. Herzel,et al.  SUBHARMONICS, BIPHONATION, AND DETERMINISTIC CHAOS IN MAMMAL VOCALIZATION , 1998 .

[39]  Eckehard Schöll,et al.  Quantification of transients using empirical orthogonal functions , 1997 .

[40]  Hanspeter Herzel,et al.  Modelling biphonation - The role of the vocal tract , 1997, Speech Commun..

[41]  H. Herzel,et al.  Whistle register and biphonation in a child's voice. , 1997, Folia phoniatrica et logopaedica : official organ of the International Association of Logopedics and Phoniatrics.

[42]  P. Argos,et al.  Seventy‐five percent accuracy in protein secondary structure prediction , 1997, Proteins.

[43]  Hanspeter Herzel,et al.  Correlations in DNA sequences: The role of protein coding segments , 1997 .

[44]  A. S.,et al.  Estimating the Entropy of DNA Sequences , 1997 .

[45]  M. Hess,et al.  Endoskopische Darstellung von Stimmlippenschwingungen Digitale Hochgeschwindigkeitsaufnahmen mit verschieden Systemen , 1996, HNO.

[46]  L. Stanfel,et al.  A new approach to clustering the amino acids. , 1996, Journal of theoretical biology.

[47]  Antoine Souloumiac,et al.  Jacobi Angles for Simultaneous Diagonalization , 1996, SIAM J. Matrix Anal. Appl..

[48]  Werner Ebeling,et al.  Entropies and Lexicographic Analysis of Biosequences , 1996 .

[49]  Jan Awrejcewicz Nonlinear Dynamics: New Theoretical and Applied Results , 1995 .

[50]  I. Grosse,et al.  MEASURING CORRELATIONS IN SYMBOL SEQUENCES , 1995 .

[51]  H. Herzel,et al.  Bifurcations in an asymmetric vocal-fold model. , 1995, The Journal of the Acoustical Society of America.

[52]  A. Arneodo,et al.  Type-II Intermittency in the Presence of Additive and Multiplicative Noise , 1995 .

[53]  Hanspeter Herzel,et al.  Modelling Heart Rate Variability Due to Respiration and Baroreflex , 1995 .

[54]  U. Hobohm,et al.  Enlarged representative set of protein structures , 1994, Protein science : a publication of the Protein Society.

[55]  M J Sippl,et al.  Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds. , 1992, Journal of molecular biology.

[56]  Hanspeter Herzel,et al.  CHAOS AND BIFURCATIONS DURING VOICED SPEECH , 1991 .

[57]  B S Weir Statistical analysis of DNA sequences. , 1988, Journal of the National Cancer Institute.

[58]  Werner Ebeling,et al.  Stochastic and Chaotic Processes in Biochemical Systems , 1988 .

[59]  H. Herzel,et al.  Chaotic dynamics and fluctuations in a biochemical system , 1987, Dynamical Systems and Environmental Models.

[60]  W. Ebeling,et al.  Thermodynamic Aspects of Selforganization , 1986 .

[61]  T. Steitz,et al.  Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. , 1986, Annual review of biophysics and biophysical chemistry.

[62]  Quantitative description of chaos in a biochemical system , 1987 .

[63]  The Influence of Fluctuations on Sustained Oscillations , 1985 .

[64]  D. Eisenberg,et al.  Analysis of membrane and surface protein sequences with the hydrophobic moment plot. , 1984, Journal of molecular biology.

[65]  R. Doolittle,et al.  A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.

[66]  M. Kanehisa,et al.  Local hydrophobicity stabilizes secondary structures in proteins , 1980, Biopolymers.

[67]  P. Y. Chou,et al.  Prediction of the secondary structure of proteins from their amino acid sequence. , 2006 .

[68]  P. Sneath Relations between chemical structure and biological activity in peptides. , 1966, Journal of theoretical biology.