Gene function classification using Bayesian models with hierarchy-based priors
暂无分享,去创建一个
[1] Daphne Koller,et al. Hierarchically Classifying Documents Using Very Few Words , 1997, ICML.
[2] Yoram Singer,et al. Large margin hierarchical classification , 2004, ICML.
[3] Kimmen Sjölander,et al. Phylogenomic inference of protein molecular function: advances and challenges , 2004, Bioinform..
[4] Saso Dzeroski,et al. Hierarchical Multi-classification with Predictive Clustering Trees in Functional Genomics , 2005, EPIA.
[5] Susan T. Dumais,et al. Hierarchical classification of Web content , 2000, SIGIR '00.
[6] Duane Szafron,et al. Improving Protein Function Prediction using the Hierarchical Structure of the Gene Ontology , 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.
[7] Ting Chen,et al. An integrated probabilistic model for functional prediction of proteins , 2003, RECOMB '03.
[8] Monica Riley,et al. Escherichia coli gene products: Physiological functions and common ancestries , 1996 .
[9] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[10] Jason Weston,et al. Gene functional classification from heterogeneous data , 2001, RECOMB.
[11] L. L. Lloyd,et al. Enzyme nomenclature — Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology: Academic Press Ltd, London, UK, 1992. xiii + 862 pp. Price £40.00. ISBN 0-12-227165-3 , 1994 .
[12] Janet M. Thornton,et al. Comparison of functional annotation schemes for genomes , 2000, Functional & Integrative Genomics.
[13] J. Fox. Applied Regression Analysis, Linear Models, and Related Methods , 1997 .
[14] Claudio Gentile,et al. Incremental Algorithms for Hierarchical Classification , 2004, J. Mach. Learn. Res..
[15] J A Eisen,et al. Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. , 1998, Genome research.
[16] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[17] Jeffrey Green,et al. The FNR Modulon and FNR-Regulated Gene Expression , 1996 .
[18] Amanda Clare,et al. Confirmation of data mining based predictions of protein function , 2004, Bioinform..
[19] Amanda Clare,et al. Predicting gene function in Saccharomyces cerevisiae , 2003, ECCB.
[20] D Haussler,et al. Knowledge-based analysis of microarray gene expression data by using support vector machines. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[21] M. Riley,et al. Functions of the gene products of Escherichia coli , 1993, Microbiological reviews.
[22] Thomas G. Dietterich. What is machine learning? , 2020, Archives of Disease in Childhood.
[23] Yiming Yang,et al. Learning Multiple Related Tasks using Latent Independent Component Analysis , 2005, NIPS.
[24] Joshua Goodman,et al. Classes for fast maximum entropy training , 2001, 2001 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings (Cat. No.01CH37221).
[25] A. Tversky,et al. Additive similarity trees , 1977 .
[26] Rich Caruana,et al. Multitask Learning , 1998, Encyclopedia of Machine Learning and Data Mining.
[27] S. Walker. Invited comment on the paper "Slice Sampling" by Radford Neal , 2003 .
[28] Michael I. Jordan,et al. Protein Molecular Function Prediction by Bayesian Phylogenomics , 2005, PLoS Comput. Biol..
[29] Thomas Hofmann,et al. Support vector machine learning for interdependent and structured output spaces , 2004, ICML.
[30] B. Rost. Enzyme function less conserved than anticipated. , 2002, Journal of molecular biology.
[31] Thomas Hofmann,et al. Hierarchical document categorization with support vector machines , 2004, CIKM '04.
[32] Hannu Toivonen,et al. Finding Frequent Substructures in Chemical Compounds , 1998, KDD.
[33] Robert E. Schapire,et al. Hierarchical multi-label prediction of gene function , 2006, Bioinform..
[34] Kimmen Sjölander,et al. Phylogenomic Inference of Protein Molecular Function , 2005, Current protocols in bioinformatics.
[35] Andreas S. Weigend,et al. Exploiting Hierarchy in Text Categorization , 1999, Information Retrieval.
[36] Radford M. Neal. Slice Sampling , 2003, The Annals of Statistics.
[37] Amanda Clare,et al. The utility of different representations of protein sequence for predicting functional class , 2001, Bioinform..
[38] D. Eisenberg,et al. Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.
[39] P. Brown,et al. Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.
[40] Tom M. Mitchell,et al. Improving Text Classification by Shrinkage in a Hierarchy of Classes , 1998, ICML.
[41] Geoffrey E. Hinton,et al. Bayesian Learning for Neural Networks , 1995 .
[42] Kui Zhang,et al. Prediction of protein function using protein-protein interaction data , 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.
[43] Tipton Kf,et al. Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Enzyme nomenclature. Recommendations 1992. Supplement: corrections and additions. , 1994 .
[44] Radford M. Neal,et al. Improving Classification When a Class Hierarchy is Available Using a Hierarchy-Based Prior , 2005, math/0510449.
[45] B. Schwikowski,et al. A network of protein–protein interactions in yeast , 2000, Nature Biotechnology.
[46] J. Guest,et al. Adaptive responses to oxygen limitation in Escherichia coli. , 1991, Trends in biochemical sciences.
[47] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.