Medical Document Mining Combining Image Exploration and Text Characterization

With an ever growing number of published scientific studies, there is a need for automated search methods, able to collect and extract as much information as possible from those articles. We propose a framework for the extraction and characterization of brain activity areas published in neuroscientific reports, as well as a suitable clustering strategy of said areas. We further show that it is possible to obtain three-dimensional summarizing brain maps, accounting for a particular topic within those studies. After, using the text information from the articles, we characterize such maps. As an illustrative experiment, we demonstrate the proposed mining approach in fMRI reports of default mode networks. The proposed method hints at the possibility of searching for both visual and textual keywords in neuro atlases.

[1]  Abraham Z. Snyder,et al.  A brief history of the resting state: The Washington University perspective , 2012, NeuroImage.

[2]  Patrick Pantel,et al.  From Frequency to Meaning: Vector Space Models of Semantics , 2010, J. Artif. Intell. Res..

[3]  Russell A. Poldrack,et al.  Large-scale automated synthesis of human functional neuroimaging data , 2011, Nature Methods.

[4]  Gerard Salton,et al.  Term-Weighting Approaches in Automatic Text Retrieval , 1988, Inf. Process. Manag..

[5]  Hugo Zaragoza,et al.  The Probabilistic Relevance Framework: BM25 and Beyond , 2009, Found. Trends Inf. Retr..

[6]  Angela R. Laird,et al.  Lost in localization? The focus is meta-analysis , 2009, NeuroImage.

[7]  Satanjeev Banerjee,et al.  The Design, Implementation, and Use of the Ngram Statistics Package , 2003, CICLing.

[8]  M. F. Porter,et al.  An algorithm for suffix stripping , 1997 .

[9]  Heikki Mannila,et al.  Principles of Data Mining , 2001, Undergraduate Topics in Computer Science.

[10]  ZaragozaHugo,et al.  The Probabilistic Relevance Framework , 2009 .

[11]  Karen Sparck Jones A statistical interpretation of term specificity and its application in retrieval , 1972 .

[12]  G L Shulman,et al.  INAUGURAL ARTICLE by a Recently Elected Academy Member:A default mode of brain function , 2001 .

[13]  Dino J. Levy,et al.  The root of all value: a neural common currency for choice , 2012, Current Opinion in Neurobiology.

[14]  G. Deco,et al.  Emerging concepts for the dynamical organization of resting-state activity in the brain , 2010, Nature Reviews Neuroscience.

[15]  Paul Clough,et al.  ImageCLEF: Experimental Evaluation in Visual Information Retrieval , 2010 .

[16]  Karen Spärck Jones A statistical interpretation of term specificity and its application in retrieval , 2021, J. Documentation.

[17]  I. Johnsrude,et al.  The problem of functional localization in the human brain , 2002, Nature Reviews Neuroscience.