Virus-genetic theory testing by data processing machines. II. Fit of classical genetic T4 data.

Abstract This is the second of three papers presenting the results of theory testing operations performed by IBM 7090 and 7094 machines. In this paper the results of theory testing operations simulating in the IBM 7094 machine a series of classical genetic experiments are compared with experimental data available for Escherichia coli phage T4 and T2. The machine runs (or experiments) were performed in much the same way as the genetic experiments they were supposed to simulate. As input or parent phages we used output or progeny phages obtained in earlier machine runs and punched on IBM cards by the machine. Both wild type phages and phages with several markers (usually 12 markers) were used as input phages. Also phage heterozygotes for one or several markers were often used as input phages. By these procedures we were able to repeat or simulate by the machine a long series of crossing experiments and other types of classical genetic experiments in the IBM 7094 machine and compare them with T2 and T4 data as a test for the theoretical model used. Among the phenomena duplicated by the machine in these tests we may quote: localized negative interference and its effect on the genetic map; clone size of low frequency recombinants; the effect of premature lysis on recombination frequency and other properties of progeny phages; properties of partial heterozygotes and their progeny; etc. The results presented are found to be in good agreement with the genetic experiments described in the literature on phage T4 and T2. Only a portion of the T4 experiments simulated in this paper and none of the experiments simulated in the subsequent paper (radiation-genetic and partial phage experiments) were used for parameter fitting.

[1]  N. A. Barricelli,et al.  Evidence derived from HNO2 mutagenesis that only one of the two DNA strands injected by phage T4 transmits hereditary information to the progeny. , 1967, Virology.

[2]  D. Freifelder,et al.  Lability of single-stranded deoxyribonucleic acid to hydrodynamic shear. , 1966, Journal of molecular biology.

[3]  M. Chase,et al.  High Negative Interference over Short Segments of the Genetic Structure of Bacteriophage T4. , 1958, Genetics.

[4]  R. Epstein A study of multiplicity-reactivation in the bacteriophage T4. I. Genetic and functional analysis of T4D-K12(lambda) complexes. , 1958, Virology.

[5]  F. Stahl The effects of the decay of incorporated radioactive phosphorus on the genome of bacteriophage T4. , 1956, Virology.

[6]  C. Levinthal,et al.  Recombination in Phage T2: Its Relationship to Heterozygosis and Growth. , 1954, Genetics.

[7]  A H DOERMANN,et al.  AN EXPERIMENTAL ANALYSIS OF BACTERIOPHAGE T4 HETEROZYGOTES. I. MOTTLED PLAQUES FROM CROSSES INVOLVING SIX RII LOCI. , 1963, Virology.

[8]  R. Edgar Phenotypic Properties of Heterozygotes in the Bacteriophage T4. , 1958, Genetics.

[9]  F. Womack AN ANALYSIS OF SINGLE-BURST PROGENY OF BACTERIA SINGLY INFECTED WITH A BACTERIOPHAGE HETEROZYGOTE. , 1963, Virology.

[10]  G. Stent,et al.  Dispersal of the parental nucleic acid of bacteriophage T4 among its progeny , 1959 .

[11]  R. Toombs,et al.  Virus-genetic theory testing by data processing machines. I. Basic procedures and models tested. , 1971, Journal of theoretical biology.

[12]  A. Kozinski,et al.  Fragmentary transfer of P32-labeled parental DNA to progeny phage. II. The average size of the transferred parental fragment. Two-cycletransfer. Repair of the polynucleotide chain after fragmentation. , 1963, Virology.

[13]  Nils Aall Barricelli,et al.  An analytical approach to the problems of phage recombination and reproduction: II. High negative interference , 1960 .

[14]  G. Mosig Coordinate variation in density and recombination potential in T4 phage particles produced at different times after infection. , 1963, Genetics.

[15]  I. Kvelland The effect of homozygous deletions upon heterozygote formation in bacteriophage T4D. , 1969, Genetical research.