SRSF shape analysis for sequencing data reveal new differentiating patterns
暂无分享,去创建一个
[1] Charity W. Law,et al. voom: precision weights unlock linear model analysis tools for RNA-seq read counts , 2014, Genome Biology.
[2] Wolfgang Huber,et al. Detecting differential usage of exons from RNA-Seq data , 2012 .
[3] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[4] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[5] Abdelhak. Zoglat,et al. Analysis of variance for functional data. , 1994 .
[6] Anuj Srivastava,et al. Statistical Analysis and Modeling of Elastic Functions , 2011 .
[7] C. Amos,et al. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq , 2015, PloS one.
[8] Gregory R. Grant,et al. Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data , 2015, Bioinform..
[9] Daniel Nilsson,et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge , 2014, Genome Biology.
[10] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[11] Clifford A. Meyer,et al. Nucleosome Dynamics Define Transcriptional Enhancers , 2010, Nature Genetics.
[12] Terrence S. Furey,et al. The UCSC Table Browser data retrieval tool , 2004, Nucleic Acids Res..
[13] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[14] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[15] David G Hendrickson,et al. Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.
[16] Zhaoyu Li,et al. DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing , 2013, Genome research.
[17] Ning Leng,et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments , 2013, Bioinform..
[18] Thomas J. Hardcastle,et al. baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data , 2010, BMC Bioinformatics.
[19] P. Chambon,et al. Differences in Gene Expression between Wild Type and Hoxa1 Knockout Embryonic Stem Cells after Retinoic Acid Treatment or Leukemia Inhibitory Factor (LIF) Removal* , 2005, Journal of Biological Chemistry.
[20] Tao Zhu,et al. Human Growth Hormone-regulated HOXA1 Is a Human Mammary Epithelial Oncogene* , 2003, The Journal of Biological Chemistry.
[21] Jianxing Feng,et al. DiNuP: a systematic approach to identify regions of differential nucleosome positioning , 2012, Bioinform..
[22] Myles Brown,et al. BINOCh: binding inference from nucleosome occupancy changes , 2011, Bioinform..
[23] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .