Preliminary Investigation of Advanced Electrostatics in Molecular Dynamics on Reconfigurable Computers
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[1] Viktor K. Prasanna,et al. Hardware/Software Approach to Molecular Dynamics on Reconfigurable Computers , 2006, 2006 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines.
[2] Volodymyr V. Kindratenko,et al. A case study in porting a production scientific supercomputing application to a reconfigurable computer , 2006, 2006 14th Annual IEEE Symposium on Field-Programmable Custom Computing Machines.
[3] Gerrit Groenhof,et al. GROMACS: Fast, flexible, and free , 2005, J. Comput. Chem..
[4] Martin C. Herbordt,et al. Accelerating molecular dynamics simulations with configurable circuits , 2005, International Conference on Field Programmable Logic and Applications, 2005..
[5] Karl S. Hemmert,et al. An analysis of the double-precision floating-point FFT on FPGAs , 2005, 13th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'05).
[6] Jeffrey S. Vetter,et al. Accelerating scientific applications with the SRC-6 reconfigurable computer: methodologies and analysis , 2005, 19th IEEE International Parallel and Distributed Processing Symposium.
[7] Gordon J. Brebner,et al. Time-critical software deceleration in a FCCM , 2004, 12th Annual IEEE Symposium on Field-Programmable Custom Computing Machines.
[8] Paul Chow,et al. Reconfigurable molecular dynamics simulator , 2004, 12th Annual IEEE Symposium on Field-Programmable Custom Computing Machines.
[9] Keith D. Underwood,et al. FPGAs vs. CPUs: trends in peak floating-point performance , 2004, FPGA '04.
[10] M. Patra,et al. Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions. , 2002, Biophysical journal.
[11] Pei Tang,et al. Large-scale molecular dynamics simulations of general anesthetic effects on the ion channel in the fully hydrated membrane: The implication of molecular mechanisms of general anesthesia , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[12] Subhash Saini,et al. Scalable Atomistic Simulation Algorithms for Materials Research , 2001, ACM/IEEE SC 2001 Conference (SC'01).
[13] T. Koishi,et al. An 8.61 Tflop/s Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM , 2000, ACM/IEEE SC 2001 Conference (SC'01).
[14] Susan B. Sinnott,et al. Molecular dynamics simulations of the filling and decorating of carbon nanotubules , 1999 .
[15] Laxmikant V. Kale,et al. NAMD2: Greater Scalability for Parallel Molecular Dynamics , 1999 .
[16] T. Darden,et al. A smooth particle mesh Ewald method , 1995 .
[17] Bob Francis,et al. Silicon Graphics Inc. , 1993 .
[18] Jacek Kitowski,et al. C-language molecular dynamics program for the simulation of Lennard-Jones particles , 1991 .
[19] Leslie Greengard,et al. A fast algorithm for particle simulations , 1987 .
[20] Edusmildo Orozco,et al. Reconfigurable Computing. Accelerating Computation with Field-Programmable Gate Arrays , 2007, Scalable Comput. Pract. Exp..
[21] Maya Gokhale,et al. Promises and Pitfalls of Reconfigurable Supercomputing , 2006, ERSA.
[22] Viktor K. Prasanna,et al. A Library of Parameterizable Floating-Point Cores for FPGAs and Their Application to Scientific Computing , 2005, ERSA.
[23] Sam Lee,et al. An FPGA Implementation of the Smooth Particle Mesh Ewald Reciprocal Sum Compute Engine (RSCE) , 2005 .
[24] Sadaf R. Alam,et al. Scientific Computing Beyond CPUs: FPGA implementations of common scientific kernels , 2005 .
[25] C. Brooks. Computer simulation of liquids , 1989 .