A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny.
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Matthias Bernt | Martin Middendorf | Karen Meusemann | Christoph Bleidorn | Peter F Stadler | Bernhard Misof | Bernd Schierwater | Martin Schlegel | Guido Fritzsch | Marleen Perseke | Frank Jühling | Lars Podsiadlowski | Sabrina Simon | Heike Hadrys | Isabella Stöger | P. Stadler | B. Schierwater | M. Middendorf | G. Fritzsch | B. Misof | A. Braband | C. Bleidorn | J. Dambach | I. Stöger | M. Schrödl | T. Struck | K. Meusemann | B. V. von Reumont | M. Bernt | A. Donath | Marleen Perseke | M. Schlegel | Sabrina Simon | L. Podsiadlowski | Frank Jühling | H. Hadrys | A. Golombek | Johannes Dambach | Michael Schrödl | Alexander Donath | Torsten H Struck | Anke Braband | Torsten H. Struck | Anja Golombek | Björn von Reumont | Matthias Bernt | Johannes Dambach | Anke Braband
[1] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[2] Sabrina Simon,et al. A comparative analysis of complete mitochondrial genomes among Hexapoda. , 2013, Molecular phylogenetics and evolution.
[3] B. Schierwater,et al. Mitogenomics at the base of Metazoa. , 2013, Molecular phylogenetics and evolution.
[4] P. Stadler,et al. MITOS: improved de novo metazoan mitochondrial genome annotation. , 2013, Molecular phylogenetics and evolution.
[5] P. Stadler,et al. Genetic aspects of mitochondrial genome evolution. , 2013, Molecular phylogenetics and evolution.
[6] I. Stöger,et al. Mitogenomics does not resolve deep molluscan relationships (yet?). , 2013, Molecular phylogenetics and evolution.
[7] M. Maldonado,et al. Deep metazoan phylogeny: when different genes tell different stories. , 2013, Molecular phylogenetics and evolution.
[8] T. Struck,et al. The impact of mitochondrial genome analyses on the understanding of deuterostome phylogeny. , 2013, Molecular phylogenetics and evolution.
[9] E. Michelakis,et al. Mitochondria in vascular health and disease. , 2013, Annual review of physiology.
[10] Fabian Kilpert,et al. Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications. , 2012, Molecular phylogenetics and evolution.
[11] Tatiana A. Tatusova,et al. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy , 2011, Nucleic Acids Res..
[12] Christophe Dessimoz,et al. Inferring orthology and paralogy. , 2012, Methods in molecular biology.
[13] B. Hausdorf,et al. The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships , 2011, BMC Genomics.
[14] H. Philippe,et al. Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough , 2011, PLoS biology.
[15] Frédéric Delsuc,et al. Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate , 2010, Science.
[16] Sarah J. Bourlat,et al. The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis , 2010, BMC Evolutionary Biology.
[17] G. Yè,et al. New Views on Strand Asymmetry in Insect Mitochondrial Genomes , 2010, PloS one.
[18] T. Stach,et al. Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis. , 2010, Molecular phylogenetics and evolution.
[19] A. Couloux,et al. Studying sources of incongruence in arthropod molecular phylogenies: sea spiders (Pycnogonida) as a case study. , 2010, Comptes rendus biologies.
[20] B. Morgenstern,et al. Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships , 2010, Molecular biology and evolution.
[21] Roberto Danovaro,et al. The first metazoa living in permanently anoxic conditions , 2010, BMC Biology.
[22] Graziano Pesole,et al. Hypervariability of ascidian mitochondrial gene order: exposing the myth of deuterostome organelle genome stability. , 2010, Molecular biology and evolution.
[23] M. Martindale,et al. Assessing the root of bilaterian animals with scalable phylogenomic methods , 2009, Proceedings of the Royal Society B: Biological Sciences.
[24] N. Galtier,et al. Mitochondrial DNA as a marker of molecular diversity: a reappraisal , 2009, Molecular ecology.
[25] Nicolas Lartillot,et al. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating , 2009, Bioinform..
[26] A. Braband,et al. Phylogeny and mitochondrial gene order variation in Lophotrochozoa in the light of new mitogenomic data from Nemertea , 2009, BMC Genomics.
[27] Alexandros Stamatakis,et al. How Many Bootstrap Replicates Are Necessary? , 2009, RECOMB.
[28] Corinne Da Silva,et al. Phylogenomics Revives Traditional Views on Deep Animal Relationships , 2009, Current Biology.
[29] Sarah J. Bourlat,et al. The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes , 2009, BMC Evolutionary Biology.
[30] U. Hwang,et al. Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa , 2009, BMC Genomics.
[31] J. Rougemont,et al. A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.
[32] D. Hickey,et al. An Evolutionary Footprint of Age-Related Natural Selection in Mitochondrial DNA , 2008, Journal of Molecular Evolution.
[33] Nicholas H. Putnam,et al. The Trichoplax genome and the nature of placozoans , 2008, Nature.
[34] Stefan Grünewald,et al. Noisy: Identification of problematic columns in multiple sequence alignments , 2008, Algorithms for Molecular Biology.
[35] Takashi Sasaki,et al. Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: implications for lophotrochozoan phylogeny. , 2008, Molecular phylogenetics and evolution.
[36] David Q. Matus,et al. Broad phylogenomic sampling improves resolution of the animal tree of life , 2008, Nature.
[37] M. Duchen,et al. Mitochondria: the hub of cellular Ca2+ signaling. , 2008, Physiology.
[38] T. Hankeln,et al. Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta. , 2007, Molecular biology and evolution.
[39] D. Hickey,et al. DNA Asymmetric Strand Bias Affects the Amino Acid Composition of Mitochondrial Proteins , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[40] Graziano Pesole,et al. The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level , 2007, BMC Evolutionary Biology.
[41] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[42] A. Braband,et al. The complete mitochondrial genome of the sea spider Nymphon gracile (Arthropoda: Pycnogonida) , 2006, BMC Genomics.
[43] Sarah J. Bourlat,et al. Mitogenomics and phylogenomics reveal priapulid worms as extant models of the ancestral Ecdysozoan , 2006, Evolution & development.
[44] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[45] M. Telford,et al. The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa. , 2006, Molecular phylogenetics and evolution.
[46] F. Delsuc,et al. Tunicates and not cephalochordates are the closest living relatives of vertebrates , 2006, Nature.
[47] J. Boore,et al. Requirements and standards for organelle genome databases. , 2006, Omics : a journal of integrative biology.
[48] A. Hassanin. Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. , 2006, Molecular phylogenetics and evolution.
[49] P. Higgs,et al. The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes , 2006, Journal of Molecular Evolution.
[50] R. Shao,et al. Molecular Mechanisms for the Variation of Mitochondrial Gene Content and Gene Arrangement Among Chigger Mites of the Genus Leptotrombidium (Acari: Acariformes) , 2006, Journal of Molecular Evolution.
[51] D. Rubinoff,et al. Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. , 2005, Systematic biology.
[52] D. Rand,et al. The Population Biology of Mitochondrial DNA and Its Phylogenetic Implications , 2005 .
[53] F. Jiggins,et al. Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts , 2005, Proceedings of the Royal Society B: Biological Sciences.
[54] N. Léger,et al. Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences. , 2005, Systematic biology.
[55] G. Gilbert,et al. THE NEW VIEW OF ANIMAL PHYLOGENY , 2005 .
[56] Guillermo Ortí,et al. First Sequenced Mitochondrial Genome from the Phylum Acanthocephala(Leptorhynchoides thecatus) and Its Phylogenetic Position Within Metazoa , 2005, Journal of Molecular Evolution.
[57] J. Boore,et al. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the Scaphopod Graptacme eborea and the bivalve Mytilus edulis. , 2004, Molecular biology and evolution.
[58] J. Boore,et al. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[59] Michael C Whitlock,et al. The incomplete natural history of mitochondria , 2004, Molecular ecology.
[60] Nicole T. Perna,et al. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes , 2004, Journal of Molecular Evolution.
[61] S Blair Hedges,et al. The colonization of land by animals: molecular phylogeny and divergence times among arthropods. , 2004, BMC biology.
[62] M. Dowton,et al. Rates of gene rearrangement and nucleotide substitution are correlated in the mitochondrial genomes of insects. , 2003, Molecular biology and evolution.
[63] J. Boore,et al. Hexapod Origins: Monophyletic or Paraphyletic? , 2003, Science.
[64] Alex Bateman,et al. QuickTree: building huge Neighbour-Joining trees of protein sequences , 2002, Bioinform..
[65] R. Cruickshank. Molecular markers for the phylogenetics of mites and ticks , 2002 .
[66] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[67] A. Butte,et al. Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues". , 2001, Physiological genomics.
[68] G. Stephanopoulos,et al. A compendium of gene expression in normal human tissues. , 2001, Physiological genomics.
[69] D. Hartl,et al. Mitochondrial pseudogenes: evolution's misplaced witnesses. , 2001, Trends in ecology & evolution.
[70] J. Searle. Phylogeography — The History and Formation of Species , 2000, Heredity.
[71] N. Lartillot,et al. The new animal phylogeny: reliability and implications. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[72] D. Sankoff,et al. Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny , 1999, Journal of Molecular Evolution.
[73] C Saccone,et al. Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. , 1998, Molecular biology and evolution.
[74] R. Raff,et al. Evidence for a clade of nematodes, arthropods and other moulting animals , 1997, Nature.
[75] L. Jermiin,et al. Nucleotide Composition Bias Affects Amino Acid Content in Proteins Coded by Animal Mitochondria , 1997, Journal of Molecular Evolution.
[76] G. Kroemer,et al. Mitochondrial control of nuclear apoptosis , 1996, The Journal of experimental medicine.
[77] A P Martin,et al. Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. , 1995, Molecular biology and evolution.
[78] Timothy M. Collins,et al. Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements , 1995, Nature.
[79] K. Halanych. The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data. , 1995, Molecular phylogenetics and evolution.
[80] W. Brown,et al. EVOLUTION OF ANIMAL MITOCHONDRIAL DNA: RELEVANCE FOR POPULATION BIOLOGY AND SYSTEMATICS , 1987 .
[81] E. Barrington,et al. The Colonization of Land , 1983 .