APCluster: an R package for affinity propagation clustering
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Ulrich Bodenhofer | Sepp Hochreiter | Andreas Kothmeier | S. Hochreiter | Ulrich Bodenhofer | Andreas Kothmeier
[1] Dirk Eddelbuettel,et al. Rcpp: Seamless R and C++ Integration , 2011 .
[2] C. Micchelli,et al. Functions that preserve families of positive semidefinite matrices , 1995 .
[3] Fan Yang,et al. A Poisson-based adaptive affinity propagation clustering for SAGE data , 2010, Comput. Biol. Chem..
[4] Sach Mukherjee,et al. Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana , 2010, Bioinform..
[5] E. Klement,et al. A fuzzy algorithm for pixel classification based on the discrepancy norm , 1996, Proceedings of IEEE 5th International Fuzzy Systems.
[6] Jerzy Tiuryn,et al. MODEVO: exploring modularity and evolution of protein interaction networks , 2010, Bioinform..
[7] Michele Leone,et al. Clustering by soft-constraint affinity propagation: applications to gene-expression data , 2007, Bioinform..
[8] Anil K. Jain,et al. Data clustering: a review , 1999, CSUR.
[9] Roland L. Dunbrack,et al. A new clustering of antibody CDR loop conformations. , 2011, Journal of molecular biology.
[10] B. Baets,et al. Metrics and T-Equalities , 2002 .
[11] C. Micchelli. Interpolation of scattered data: Distance matrices and conditionally positive definite functions , 1986 .
[12] F Yang,et al. Using affinity propagation combined post-processing to cluster protein sequences. , 2010, Protein and peptide letters.
[13] Shoshana J. Wodak,et al. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs , 2009, BMC Bioinformatics.
[14] Thomas G. Dietterich. Adaptive computation and machine learning , 1998 .
[15] J. H. Ward. Hierarchical Grouping to Optimize an Objective Function , 1963 .
[16] Delbert Dueck,et al. Clustering by Passing Messages Between Data Points , 2007, Science.
[17] H. Weyl. Über die Gleichverteilung von Zahlen mod. Eins , 1916 .
[18] Hui Liu,et al. Detecting microarray data supported microRNA-mRNA interactions , 2010, Int. J. Data Min. Bioinform..
[19] Jeffrey Skolnick,et al. TASSER_low‐zsc: An approach to improve structure prediction using low z‐score–ranked templates , 2010, Proteins.
[20] Chih-Wei Wang,et al. iPARTS: an improved tool of pairwise alignment of RNA tertiary structures , 2010, Nucleic Acids Res..
[21] Eleazar Eskin,et al. The Spectrum Kernel: A String Kernel for SVM Protein Classification , 2001, Pacific Symposium on Biocomputing.
[22] Ingrid G. Abfalter,et al. Complex Networks Govern Coiled-Coil Oligomerization – Predicting and Profiling by Means of a Machine Learning Approach , 2011, Molecular & Cellular Proteomics.
[23] Kurt Hornik,et al. kernlab - An S4 Package for Kernel Methods in R , 2004 .
[24] Bernhard Schölkopf,et al. Learning with kernels , 2001 .
[25] K. Arndt,et al. Coiled Coil Domains: Stability, Specificity, and Biological Implications , 2004, Chembiochem : a European journal of chemical biology.
[26] Georgios A. Pavlopoulos,et al. Arena3D: visualization of biological networks in 3D , 2008, BMC Systems Biology.