Edgar Wingender

发表

Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms

T. Heinemeyer, Xin Chen, Holger Karas, 1999, Nucleic Acids Res..

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Gary D. Bader, Frank Schacherer, Edgar Wingender, 2010 .

EndoNet: an information resource about the intercellular signaling network

Edgar Wingender, Jürgen Dönitz, E. Wingender, 2014, BMC Systems Biology.

TFClass: expanding the classification of human transcription factors to their mammalian orthologs

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2017, Nucleic Acids Res..

The German Conference on Bioinformatics 2001

Edgar Wingender, E. Wingender, 2002, Silico Biol..

Frontmatter, Table of Contents, Preface, Conference Organization

Martin Kollmar, Edgar Wingender, Tim Beißbarth, 2013, German Conference on Bioinformatics.

Combinatorial identification of promoters induced upon immune cell activation

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 1998, German Conference on Bioinformatics.

TiProD: the Tissue-specific Promoter Database

Xin Chen, Alexander E. Kel, Edgar Wingender, 2005, Nucleic Acids Res..

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2013, BMC Bioinformatics.

Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2005, German Conference on Bioinformatics.

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources

Martin Vingron, Christian von Mering, Ines Liebich, 2004, Bioinform..

The TRANSFAC database and consind program as tools for describing and understanding regulatory functions of the genome

Holger Karas, Edgar Wingender, Thomas Werner, 1995 .

A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs

Alexander E. Kel, Edgar Wingender, Jürgen Borlak, 2013, PLoS Comput. Biol..

Identifizierung kritischer Komponenten in genregulatorischen Netzwerken

Edgar Wingender, Anatolij P. Potapov, Björn Goemann, 2013, BIOspektrum.

S/MARt DB: A database on chromatin organizing S/MAR regions

Ines Liebich, Edgar Wingender, Jürgen Bode, 1999, German Conference on Bioinformatics.

TRANSCompel®: a database on composite regulatory elements in eukaryotic genes

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2002, Nucleic Acids Res..

Integrating Pathway Data for Systems Pathology

Olga V. Kel-Margoulis, Frank Schacherer, Edgar Wingender, 2007, Silico Biol..

Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems

Edgar Wingender, Tim Beißbarth, Klaus Jung, 2013, Comput. Methods Programs Biomed..

Integrated databases and computer systems for studying eukaryotic gene expression

Edgar Wingender, Luciano Milanesi, G. Christian Overton, 1999, Bioinform..

Petri Net Applications in Molecular Biology

Edgar Wingender, 2010, Silico Biol..

TRANSPATH®: a high quality database focused on signal transduction : Data integration in functional genomics and proteomics: application to biological pathways

Edgar Wingender, Mathias Krull, Anatolij Potapov, 2004 .

A database framework for mapping expression patterns

Xin Chen, Holger Karas, Ingmar Reuter, 1999, German Conference on Bioinformatics.

Transcription regulation regions revealed by Signal detection and fuzzy clusterfng

Frank Klawonn, Ingmar Reuter, Edgar Wingender, 1997, German Conference on Bioinformatics.

Eine Hierarchie molekularbiologischer Datenbanken zur Beschreibung genregulatorischer Prozesse (Zusammenfassung)

Edgar Wingender, Edgar Wingender, 1998, Workshop Data Mining und Data Warehousing.

Transcription regulatory region analysis using signal detection and fuzzy clustering

Frank Klawonn, Ingmar Reuter, Edgar Wingender, 1998, Bioinform..

Deriving an ontology for human gene expression sources from the CYTOMER? database on human organs and cell types

Xin Chen, Edgar Wingender, Ellen Fricke, 2004, Silico Biol..

Application of Kernel Method to Reveal Subtypes of TF Binding Motifs

Alexander E. Kel, Edgar Wingender, Jürgen Borlak, 2004, Regulatory Genomics.

E2F composite units in promoters of cell cycle genes

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 1999, German Conference on Bioinformatics.

Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2000, German Conference on Bioinformatics.

COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2000, Nucleic Acids Res..

TRANSPATH: An integrated database on signal transduction and a tool for array analysis

Edgar Wingender, Mathias Krull, Anatolij Potapov, 2003, Nucleic Acids Res..

A hierarchy of databases for modeling gene regulatory mechanisms

T. Heinemeyer, Xin Chen, Alexander E. Kel, 1998, German Conference on Bioinformatics.

The TRANSPATH signal transduction database: a knowledge base on signal transduction networks

Frank Schacherer, Edgar Wingender, Mathias Krull, 2001, Bioinform..

Modeling the Architecture of Regulatory Networks

Edgar Wingender, Anatolij Potapov, E. Wingender, 2001, German Conference on Bioinformatics.

ISB: Just another journal?

Edgar Wingender, E. Wingender, 1998, Silico Biol..

TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences

Holger Karas, Edgar Wingender, Heinz Sklenar, 1996, German Conference on Bioinformatics - Selected Papers.

Recognition of multiple patterns in unaligned sets of sequences. Comparison of kernel clustering method with other methods

Alexander E. Kel, Edgar Wingender, Nico Voss, 2003, German Conference on Bioinformatics.

The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks

Edgar Wingender, Björn Goemann, Anatolij Potapov, 2008, BMC Bioinformatics.

The Transpath Signal Transduction Database

Frank Schacherer, Edgar Wingender, E. Wingender, 1999, German Conference on Bioinformatics.

Criteria for an updated Classification of Human transcription factor DNA-binding Domains

Edgar Wingender, E. Wingender, 2013, J. Bioinform. Comput. Biol..

The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications

Edgar Wingender, Jürgen Dönitz, 2012, Front. Gene..

TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes

Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, 2005, Nucleic Acids Res..

TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2005, Nucleic Acids Res..

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation

T. Heinemeyer, Holger Karas, Alexander E. Kel, 1997, Nucleic Acids Res..

Identification of the significant conformational features of functional sites in B-DNA

Alexander E. Kel, Edgar Wingender, Nikolay A. Kolchanov, 1997, German Conference on Bioinformatics.

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell

Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, 2013, Algorithms for Molecular Biology.

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2019, BMC Bioinformatics.

Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods

Alexander E. Kel, Edgar Wingender, Ekaterina Shelest, 2003, Silico Biol..

EndoNet: an information resource about endocrine networks

Ines Liebich, Edgar Wingender, Jürgen Dönitz, 2005, Nucleic Acids Res..

TRANSPATH, TRANSFAC and CYTOMER as starting points for an ontology of regulatory networks

Edgar Wingender, E. Wingender, 2003, Silico Biol..

Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming

Edgar Wingender, Sebastian Herzog, Stephan Waack, 2014, BMC Bioinformatics.

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information

Edgar Wingender, Stephan Waack, Xu Hua, 2015, BMC Bioinformatics.

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL

T. Heinemeyer, Alexander E. Kel, Olga V. Kel-Margoulis, 1998, Nucleic Acids Res..

Cytomer: A database on gene expression sources

Edgar Wingender, Ellen Fricke, Sigrid Land, 2001, German Conference on Bioinformatics.

BioPAX – A community standard for pathway data sharing

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010, Nature Biotechnology.

PathoDB - a database that combines pathological data with molecular information

T. Meinhardt, Edgar Wingender, M. Prüß, 1999, German Conference on Bioinformatics.

S/MARt DB: a database on scaffold/matrix attached regions

Ines Liebich, Edgar Wingender, Jürgen Bode, 2002, Nucleic Acids Res..

An approach to evaluate the topological significance of motifs and other patterns in regulatory networks

Edgar Wingender, Björn Goemann, Anatolij Potapov, 2009, BMC Systems Biology.

Preface: The Second Workshop on Ontology and Genome

Edgar Wingender, Toshihisa Takagi, Takako Takai-Igarashi, 2003, Silico Biol..

EndoNet: an information resource about regulatory networks of cell-to-cell communication†

Edgar Wingender, Jürgen Dönitz, Holger Michael, 2007, Nucleic Acids Res..

TRANSPATH - a database on signal transduction networks

Frank Schacherer, Edgar Wingender, Mathias Krull, 2001, German Conference on Bioinformatics.

TFClass: an expandable hierarchical classification of human transcription factors

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2012, Nucleic Acids Res..

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network

Jie Li, Jin Wang, Edgar Wingender, 2011, BMC Systems Biology.

geneXplain — eine integrierte Bioinformatik-Plattform

Edgar Wingender, Alexander Kel, 2012, BIOspektrum.

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2001, Pacific Symposium on Biocomputing.

MATCHTM: a tool for searching transcription factor binding sites in DNA sequences

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2003, Nucleic Acids Res..

Building a knowledge base for systems pathology

Alexander E. Kel, Olga V. Kel-Margoulis, Frank Schacherer, 2008, Briefings Bioinform..

Third "Ontology Workshop on Ontology and Genomes"

Edgar Wingender, Toshihisa Takagi, Holger Michael, 2005 .

Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements

Holger Karas, Edgar Wingender, Rainer Knüppel, 1996, Comput. Appl. Biosci..

TFClass: a classification of human transcription factors and their rodent orthologs

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2014, Nucleic Acids Res..

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes

Anirban Mukhopadhyay, Edgar Wingender, Martin Haubrock, 2015, BMC Bioinformatics.

The integrated TRANSFAC system as a basis for modeling the architecture of gene regulatory networks

Frank Schacherer, Edgar Wingender, Klaus Seidl, 2001, German Conference on Bioinformatics.

TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2001, German Conference on Bioinformatics.

The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH

Edgar Wingender, Claudia Choi, Dorothee-U. Kloos, 2001, German Conference on Bioinformatics.

Combined Approaches for the Detection of Regulatory Genomic Signals

Holger Karas, Edgar Wingender, Rainer Knüppel, 1996, German Conference on Bioinformatics.

Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks

Jie Li, Edgar Wingender, Martin Haubrock, 2012, BMC Systems Biology.

Preface - Third "Ontology Workshop on Ontology and Genomes"

Edgar Wingender, Toshihisa Takagi, Holger Michael, 2004, Silico Biol..

TRANSFAC®: transcriptional regulation, from patterns to profiles

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2003, Nucleic Acids Res..

Comparative analysis of topological patterns in different mammalian networks.

Edgar Wingender, Bjoern Goemann, Anatolij P Potapov, 2009, Genome informatics. International Conference on Genome Informatics.

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

Edgar Wingender, E. Wingender, 2008, Briefings Bioinform..

Composition-sensitive analysis of the human genome for regulatory signals

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2003, Silico Biol..

Molecular mechanistic associations of human diseases

Alexander E. Kel, Edgar Wingender, Mathias Krull, 2010, BMC Systems Biology.

BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation

Gary D. Bader, Christopher W. V. Hogue, Edgar Wingender, 2005 .

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome

T. Heinemeyer, Alexander E. Kel, Edgar Wingender, 1998, ISMB.

Quo Vadis Bioinformatik, neue Konzepte und Arbeitsbereiche (Quo Vadis Bioinformatics – New Concepts and Areas)

Holger Karas, Edgar Wingender, Michael Tysiak, 2004, it Inf. Technol..

Inhomogeneous Parsimonious Markov Models

Edgar Wingender, Ivo Grosse, Ralf Eggeling, 2013, ECML/PKDD.

Beyond microarrays: Finding key transcription factors controlling signal transduction pathways

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2006, BMC Bioinformatics.

-PheGe- a novel concept for in-silico analyses of genotype/phenotype relations

Edgar Wingender, Klaus Seidl, E. Wingender, 2001, German Conference on Bioinformatics.

In Memory of Dan Prestridge

Edgar Wingender, Thomas Werner, E. Wingender, 2000, Silico Biol..

Identifying cell-specific microRNA transcriptional start sites

Jie Li, Jin Wang, Edgar Wingender, 2016, Bioinform..

PRODORIC: prokaryotic database of gene regulation

Edgar Wingender, Simone Linz, Dieter Jahn, 2003, Nucleic Acids Res..

TRANSFAC: a database on transcription factors and their DNA binding sites

Holger Karas, Edgar Wingender, Rainer Knüppel, 1996, Nucleic Acids Res..

The architecture of the gene regulatory networks of different tissues

Jie Li, Jin Wang, Edgar Wingender, 2012, Bioinform..

Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences

Alexander E. Kel, Edgar Wingender, Luciano Milanesi, 1995, ISMB.

Evaluating phylogenetic footprinting for human-rodent comparisons

Edgar Wingender, Tilman Sauer, Ekaterina Shelest, 2006, Bioinform..

δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data

Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, 2012, WABI.

DEEP—A tool for differential expression effector prediction

Edgar Wingender, Jürgen Dönitz, Martin Haubrock, 2007, Nucleic Acids Res..

The TRANSFAC system on gene expression regulation

Xin Chen, Ines Liebich, Frank Schacherer, 2001, Nucleic Acids Res..

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines

Edgar Wingender, Xu Hua, Jin Wang, 2017, Nucleic Acids Res..

From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2004, German Conference on Bioinformatics.

Bioinformatik & Bioinformation: Braunschweig spielt eine führende Rolle

Edgar Wingender, Dietmar Schomburg, D. Schomburg, 2012, 40 Jahre Informatik @ Braunschweig.

geneXplainR: An R interface for the geneXplain platform

Alexander E. Kel, Edgar Wingender, Philip Stegmaier, 2017, J. Open Source Softw..

TRANSFAC: an integrated system for gene expression regulation

Xin Chen, Holger Karas, Ines Liebich, 2000, Nucleic Acids Res..

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2006, Bioinform..

TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks.

Edgar Wingender, E. Wingender, 2004, In silico biology.

Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany

Edgar Wingender, E. Wingender, 2001, German Conference on Bioinformatics.

Corrigendum: The BioPAX community standard for pathway data sharing

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010 .

Databases and Tools for in silico Analysis of Regulation of Gene Expression

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2005 .

“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data

Alexander E. Kel, Edgar Wingender, Philip Stegmaier, 2015, Microarrays.

A Novel Computational Approach for the Prediction of Networked Transcription Factors of Aryl Hydrocarbon-Receptor-Regulated Genes

Edgar Wingender, Jürgen Borlak, Susanne Reymann, 2004, Molecular Pharmacology.

Removing Background Co-occurrences of Transcription Factor Binding Sites Greatly Improves the Prediction of Specific Transcription Factor Cooperations

Edgar Wingender, Mehmet Gültas, Cornelia Meckbach, 2018, Front. Genet..

Consistent re-modeling of signaling pathways and its implementation in the TRANSPATH database.

Edgar Wingender, Mathias Krull, Torsten Crass, 2004, Genome informatics. International Conference on Genome Informatics.

Topological peculiarities of mammalian networks with different functionalities: transcription, signal transduction and metabolic networks

Edgar Wingender, Anatolij P. Potapov, Björn Goemann, 2011 .

Multi-omics “upstream analysis” of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2016, EuPA open proteomics.

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

Gene Regulation in Eukaryotes

Edgar Wingender, 1993 .

Systematic DNA-binding domain classification of transcription factors.

Edgar Wingender, Philip Stegmaier, Alexander E Kel, 2004, Genome informatics. International Conference on Genome Informatics.

The TRANSFAC System on Gene Regulation

Edgar Wingender, 貴子高井, 2000 .

DATABASES ON GENE REGULATION

Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, 2005 .

Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Edgar Wingender, E. Wingender, E. Shelest, 2005, Theoretical Biology and Medical Modelling.