Boris Lenhard

发表

HGVbase: a curated resource describing human DNA variation and phenotype relationships

D. Fredman, G. Munns, Daniel Rios, 2004, Nucleic Acids Res..

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

Wyeth W. Wasserman, Boris Lenhard, Albin Sandelin, 2005, Nucleic Acids Res..

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

David J. Arenillas, Andrew T. Kwon, Wyeth W. Wasserman, 2009, Nucleic Acids Res..

OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica

Boris Lenhard, Gemma B. Danks, Patrick Wincker, 2012, Nucleic Acids Res..

Two independent transcription initiation codes overlap on vertebrate core promoters

Nan Li, Boris Lenhard, Piero Carninci, 2014, Nature.

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2017, Nucleic acids research.

CNEr: a toolkit for exploring extreme noncoding conservation

Ge Tan, Boris Lenhard, Dimitris Polychronopoulos, 2019, PLoS Comput. Biol..

RNAdb 2.0—an expanded database of mammalian non-coding RNAs

Boris Lenhard, John S. Mattick, Ken C. Pang, 2006, Nucleic Acids Res..

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Teruyoshi Hishiki, Katsuhiko Murakami, Yoshihiro Kawahara, 2007, Nucleic Acids Res..

ConSite: web-based prediction of regulatory elements using cross-species comparison

Wyeth W. Wasserman, Boris Lenhard, Albin Sandelin, 2004, Nucleic Acids Res..

Translog, a web browser for studying the expression divergence of homologous genes

Boris Lenhard, Altuna Akalin, Xianjun Dong, 2010, BMC Bioinformatics.

TFBS: Computational framework for transcription factor binding site analysis

Wyeth W. Wasserman, Boris Lenhard, W. Wasserman, 2002, Bioinform..

In Silico Detection of Sequence Variations Modifying Transcriptional Regulation

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2007, PLoS Comput. Biol..

RNAdb—a comprehensive mammalian noncoding RNA database

Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick, 2004, Nucleic Acids Res..

A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates

Boris Lenhard, Alexander J Nash, B. Lenhard, 2018, Bioinform..

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

Wyeth W. Wasserman, Boris Lenhard, Albin Sandelin, 2004, Nucleic Acids Res..

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Ole Winther, Boris Lenhard, Anders Krogh, 2007, Nucleic Acids Res..

JASPAR TFBS LOLA databases - Part 2

Wyeth W. Wasserman, Boris Lenhard, Rafael Riudavets Puig, 2021 .

JASPAR TFBS LOLA databases - Part 1

Wyeth W. Wasserman, Boris Lenhard, Rafael Riudavets Puig, 2021 .

The random versus fragile breakage models of chromosome evolution: a matter of resolution

Boris Lenhard, Thomas S. Becker, B. Lenhard, 2007, Molecular Genetics and Genomics.

Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3

Boris Lenhard, Thomas S. Becker, Miguel Manzanares, 2009, Proceedings of the National Academy of Sciences.

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes

Boris Lenhard, Xianjun Dong, B. Lenhard, 2009, Genome Biology.

A global genomic transcriptional code associated with CNS-expressed genes.

Boris Lenhard, Albin Sandelin, Johan Ericson, 2006, Experimental cell research.

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

Boris Lenhard, Albin Sandelin, Johan Ericson, 2004, BMC Genomics.

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes.

Boris Lenhard, Thomas A. Hawkins, B. Lenhard, 2009, Developmental biology.

Transcriptional memory of cells of origin overrides β‐catenin requirement of MLL cancer stem cells

Boris Lenhard, Amanda J. Wilson, Magdalena Zarowiecki, 2017, The EMBO journal.

Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes

Boris Lenhard, Jeroen Demmers, Jan Christian Bryne, 2011, Nature Genetics.

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes

Boris Lenhard, Hiroshi Kikuta, Silke Rinkwitz, 2007, Genome Biology.

r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data

Boris Lenhard, Ralph Stadhouders, Supat Thongjuea, 2013, Nucleic acids research.

Targeting Aberrant Epigenetic Networks Mediated by PRMT1 and KDM4C in Acute Myeloid Leukemia

Boris Lenhard, B. Lenhard, C. So, 2016, Cancer cell.

A Cohesin-Independent Role for NIPBL at Promoters Provides Insights in CdLS

Boris Lenhard, Ryuichiro Nakato, Jessica Zuin, 2014, PLoS genetics.

JASPAR: an open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Boris Lenhard, 2018 .

Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks

Boris Lenhard, B. Lenhard, Ana Barešić, 2019, Molecular Psychiatry.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Boris Lenhard, B. Lenhard, Shannan J. Ho Sui, 2007, Genome research.

The DNA-binding protein CTCF limits proximal Vκ recombination and restricts κ enhancer interactions to the immunoglobulin κ light chain locus.

Boris Lenhard, Ralph Stadhouders, Supat Thongjuea, 2011, Immunity.

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

Boris Lenhard, Piero Carninci, Uwe Strähle, 2013, Genome research.

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation.

Christine Steinhoff, Boris Lenhard, Ralph Stadhouders, 2010, Genes & development.

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

Boris Lenhard, B. Lenhard, P. Engström, 2008, Genome Biology.

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Boris Lenhard, Piero Carninci, Yoshihide Hayashizaki, 2015, Nucleic acids research.

Dynamic long‐range chromatin interactions control Myb proto‐oncogene transcription during erythroid development

Boris Lenhard, Ralph Stadhouders, Supat Thongjuea, 2012, The EMBO journal.

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

Boris Lenhard, Nathan C. Sheffield, Nathan C Sheffield, 2013, Genome research.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

Boris Lenhard, Paul Flicek, Rachel Patton McCord, 2013 .

Chromatin and epigenetic features of long-range gene regulation

Boris Lenhard, Nathan Harmston, B. Lenhard, 2013, Nucleic acids research.

Gene Characterization Index: Assessing the Depth of Gene Annotation

Wyeth W. Wasserman, Boris Lenhard, Dimas Yusuf, 2008, PloS one.

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Frédéric Delsuc, Boris Lenhard, Hans Lehrach, 2010, Science.

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

Boris Lenhard, Piero Carninci, Yoshihide Hayashizaki, 2007, Nature Reviews Genetics.

Conserved non-coding elements: developmental gene regulation meets genome organization

Boris Lenhard, Dimitris Polychronopoulos, Ge Tan, 2017, Nucleic acids research.

Genome-wide DNA methylation profiling of non-small cell lung carcinomas

Boris Lenhard, Supat Thongjuea, Vanja Haberle, 2012, Epigenetics & Chromatin.

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

Boris Lenhard, Paul Flicek, Thomas Carroll, 2015 .

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation

David Gomez-Cabrero, Boris Lenhard, Ya Guo, 2019, PLoS biology.

The mystery of extreme non-coding conservation

Boris Lenhard, Nathan Harmston, B. Lenhard, 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.

Promoter architectures and developmental gene regulation.

Boris Lenhard, Vanja Haberle, B. Lenhard, 2016, Seminars in cell & developmental biology.

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .

CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses

Martin Vingron, Boris Lenhard, Helge G. Roider, 2009, Nucleic acids research.

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Mathieu Blanchette, Nicholas M. Luscombe, Boris Lenhard, 2020, Nature Communications.

GeneLynx mouse: integrated portal to the mouse genome.

Boris Lenhard, Wyeth W Wasserman, Claes Wahlestedt, 2003, Genome research.

Genomewide DNA Methylation Analysis Identifies Novel Methylated Genes in Non–Small-Cell Lung Carcinomas

Boris Lenhard, Vanja Haberle, Frank Grosveld, 2013, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.