J. Hey

发表

Demographic Inference Using Spectral Methods on SNP Data, with an Analysis of the Human Out-of-Africa Expansion

Sergio Lukić, J. Hey, 2012, Genetics.

Non-equilibrium allele frequency spectra via spectral methods.

Kevin C. Chen, Sergio Lukić, J. Hey, 2010, Theoretical population biology.

On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas

J. Hey, 2005, PLoS biology.

Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

R. Nielsen, J. Hey, 2004, Genetics.

The population genetics of the origin and divergence of the Drosophila simulans complex species.

J. McCarter, P. Andolfatto, J. Coyne, 2000, Genetics.

Isolation with migration models for more than two populations.

J. Hey, 2010, Molecular biology and evolution.

On the failure of modern species concepts.

Jody Hey, J. Hey, 2006, Trends in ecology & evolution.

A Hidden Markov Model for Investigating Recent Positive Selection through Haplotype Structure

Jody Hey, Montgomery Slatkin, M. Slatkin, 2014, bioRxiv.

Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models

V. Sousa, N. Ferrand, J. Hey, 2013, Genetics.

An estimator of first coalescent time reveals selection on young variants and large heterogeneity in rare allele ages among human populations

Alexander Platt, J. Hey, Alyssa Pivirotto, 2019, PLoS genetics.

Exact Calculation of the Joint Allele Frequency Spectrum for Isolation with Migration Models

A. Kern, J. Hey, 2016, Genetics.

A Hidden Markov Model for Investigating Recent Positive Selection through Haplotype Structure

Jody Hey, Montgomery Slatkin, M. Slatkin, 2014, bioRxiv.

Estimating ancestral population parameters.

J. Wakeley, J. Hey, Jody Hey, 1997, Genetics.

Emerging Frontiers in the Study of Molecular Evolution

M. Meyer, D. Liberles, D. Posada, 2020, Journal of Molecular Evolution.

The limits of selection during maize domestication

Jody Hey, Rong-Lin Wang, Adrian Stec, 1999, Nature.

A coalescent estimator of the population recombination rate.

J. Wakeley, J. Hey, J Wakeley, 1997, Genetics.

Understanding and confronting species uncertainty in biology and conservation

Jody Hey, Michael L. Arnold, R. Butlin, 2003 .

The mind of the species problem.

J. Hey, J Hey, 2001, Trends in ecology & evolution.

Phylogeny Estimation by Integration over Isolation with Migration Models

S. Tishkoff, V. Sousa, J. Hey, 2018, Molecular biology and evolution.

Bayesian Analysis of Evolutionary Divergence with Genomic Data Under Diverse Demographic Models

J. Hey, Yujin Chung, 2016, bioRxiv.

Bayesian Analysis of Evolutionary Divergence with Genomic Data Under Diverse Demographic Models

J. Hey, Yujin Chung, 2016, bioRxiv.

The study of structured populations — new hope for a difficult and divided science

Jody Hey, C. A. Machado, J. Hey, 2003, Nature Reviews Genetics.

Divergent haplotypes and human history as revealed in a worldwide survey of X-linked DNA sequence variation.

S. Tishkoff, A. Nato, J. Hey, 2006, Molecular biology and evolution.

Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells

A. Moser, J. Hacia, Mazen W. Karaman, 2013, Lipids in Health and Disease.

On the arbitrary identification of real species

J. Hey, 2008 .

A perspective on the 'species problem'

J. Hey, 2002 .

chromosome evidence for ancient human histories

J. Hey, E. Harris, 1999 .

Sequence Variation at the Period Locus Reveals the History of Species and Speciation Events in the DrosqPhiZu

J. Hey, H. Hilton, 2002 .

IMa2p – parallel MCMC and inference of ancient demography under the Isolation with migration (IM) model

J. Hey, Arun Sethuraman, 2016, Molecular ecology resources.

Homozygous and Hemizygous Viability Variation on the X Chromosome of DROSOPHILA MELANOGASTER.

D. Houle, J. Hey, W. Eanes, 1985, Genetics.

correction: The limits of selection during maize domestication

J. Doebley, J. Hey, A. Stec, 2001, Nature.

Model-based assessments of differential introgression and linked natural selection during divergence and speciation

V. Sousa, J. Hey, Arun Sethuraman, 2019, bioRxiv.

In defence of model‐based inference in phylogeography

Jukka Corander, Mark A Beaumont, Rasmus Nielsen, 2010, Molecular ecology.

Population bottlenecks and patterns of human polymorphism.

J. Hey, E. Harris, 1999, Molecular biology and evolution.

Principles of population genetics (2nd edn)

Jody Hey, J. Hey, 1989 .

Divergence with Gene Flow: Models and Data

Jody Hey, Catarina Pinho, J. Hey, 2010 .

Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives.

C. A. Machado, J. Hey, R. Kliman, 2002, Molecular biology and evolution.

Origins of modern humans still look recent

J. Hey, E. Harris, 2000, Current Biology.

X chromosome evidence for ancient human histories.

J. Hey, E. Harris, J Hey, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Human Demography in the Pleistocene: Do Mitochondrial and Nuclear Genes Tell the Same Story?

J. Hey, E. Harris, 1999 .

Mitochondrial and nuclear genes present conflicting portraits of human origins.

J. Hey, 1997, Molecular biology and evolution.

Speciation and inversions: chimps and humans.

J. Hey, 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

Reduced natural selection associated with low recombination in Drosophila melanogaster.

J. Hey, R. Kliman, J Hey, 1993, Molecular biology and evolution.

Human populations show reduced DNA sequence variation at the Factor IX locus

J. Hey, E. Harris, 2001, Current Biology.

The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses.

J. Hey, 2010, Molecular biology and evolution.

Divergence population genetics of chimpanzees.

Jody Hey, Yong-Jin Won, J. Hey, 2004, Molecular biology and evolution.

Interactions between natural selection, recombination and gene density in the genes of Drosophila.

J. Hey, R. Kliman, 2002, Genetics.

Anticipating Scientific Revolutions in Evolutionary Genetics

J. Hey, 2000 .

The effects of mutation and natural selection on codon bias in the genes of Drosophila.

J. Hey, R. Kliman, 1994, Genetics.

Understanding the origin of species with genome-scale data: modelling gene flow

V. Sousa, J. Hey, 2013, Nature Reviews Genetics.

Vicariance divergence and gene flow among islet populations of an endemic lizard

J. Hey, B. Hansson, A. Runemark, 2012, Molecular ecology.

Regarding the Confusion between the Population Concept and Mayr's “Population Thinking”

J. Hey, 2011, The Quarterly Review of Biology.

Estimating Divergence Parameters With Small Samples From a Large Number of Loci

J. Hey, Yong Wang, 2010, Genetics.

CHAPTER TWO On the arbitrary identification of real species jody hey Introduction

J. Hey, 2008 .

Evolution of population structure in a highly social top predator, the killer whale.

J. Hey, M. Dahlheim, V. Burkanov, 2007, Molecular biology and evolution.

Recent advances in assessing gene flow between diverging populations and species.

J. Hey, 2006, Current opinion in genetics & development.

Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species

R. Nielsen, J. Hey, Y. Won, 2004, Molecular ecology.

Gene Flow and Natural Selection in the Origin of Drosqphila ~ s d o o b s c ~ r a and Close Relatives

J. Hey, John, Rong, 2002 .

Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives.

J. Wakeley, J. Hey, R. L. Wang, 1997, Genetics.

USING PHYLOGENETIC TREES TO STUDY SPECIATION AND EXTINCTION

J. Hey, 1992, Evolution; international journal of organic evolution.

Joint Inference of Population Assignment and Demographic History

J. Hey, S. Choi, 2011, Genetics.

Revealed in Multi-population Isolation-with-Migration Analyses

J. Hey, 2009 .

GENE FLOW BETWEEN DROSOPHILA PSEUDOOBSCURA AND D. PERSIMILIS

M. Noor, J. Hey, N. Johnson, 2000, Evolution; international journal of organic evolution.

Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex.

J. Hey, R. Kliman, 1993, Molecular biology and evolution.

the fitness consequences of P element insertion in Drosophila melanogaster

J. Ajioka, D. Houle, J. Hey, 1988 .

Weak selection on synonymous codons substantially inflates dN/dS estimates in bacteria

Sergei L. Kosakovsky Pond, J. Hey, A. Webb, 2021, Proceedings of the National Academy of Sciences.

Origins of Shared Genetic Variation in African Cichlids

F. Di Palma, K. Lindblad-Toh, J. Streelman, 2012, Molecular biology and evolution.

DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex.

J. Hey, R. Kliman, 1993, Genetics.

Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males.

C. A. Machado, J. Hey, Zi-Feng Jiang, 2011, Molecular biology and evolution.

Recombination and the Divergence of Hybridizing Species

M. Noor, J. Hey, D. Ortiz-Barrientos, 2002, Genetica.

Inferring Very Recent Population Growth Rate from Population-Scale Sequencing Data: Using a Large-Sample Coalescent Estimator.

Jody Hey, J. Hey, Hua Chen, 2015, Molecular biology and evolution.

Sampling from Natural Populations with RNAi Reveals High Outcrossing and Population Structure in Caenorhabditis elegans

J. Hey, A. Sivasundar, 2005, Current Biology.

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

Jody Hey, Rasmus Nielsen, R. Nielsen, 2007, Proceedings of the National Academy of Sciences.

On the occurrence of false positives in tests of migration under an isolation‐with‐migration model

J. Hey, Arun Sethuraman, Yujin Chung, 2015, Molecular ecology.

The structure of genealogies and the distribution of fixed differences between DNA sequence samples from natural populations.

J. Hey, J Hey, Jody Hey, 1991, Genetics.

Divergence time estimation using ddRAD data and an isolation-with-migration model applied to water vole populations of Arvicola

J. Hey, J. Castresana, J. Ventura, 2022, Scientific Reports.

Speciation and Patterns of Diversity: On the arbitrary identification of real species

J. Hey, 2009 .

USING HITCHHIKING GENES TO STUDY ADAPTATION AND DIVERGENCE DURING SPECIATION WITHIN THE DROSOPHILA MELANOGASTER SPECIES COMPLEX

J. Hey, R. Kliman, H. Hilton, 1994, Evolution; international journal of organic evolution.

Systematics and the origin of species: An introduction

F. Ayala, W. Fitch, J. Hey, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Habitat choice in the Drosophila affinis subgroup

D. Houle, J. Hey, 1987, Heredity.

IN VIVO Function of Rare G6pd Variants from Natural Populations of DROSOPHILA MELANOGASTER.

J. Hey, W. Eanes, 1986, Genetics.

POPULATION GENETICS AND OBJECTIVITY IN SPECIES DIAGNOSIS

J. Hey, C. Pinho, 2012, Evolution; international journal of organic evolution.

Selfish genes, pleiotropy and the origin of recombination.

J. Hey, 1998, Genetics.

Genealogical Portraits of Speciation in the Drosophila melanogaster Species Complex

J. Hey, R. Kliman, 1994 .

A multi-dimensional coalescent process applied to multi-allelic selection models and migration models.

J. Hey, J Hey, 1991, Theoretical population biology.

Targeted selection experiments and enzyme polymorphism: negative evidence for octanoate selection at the G6PD locus in Drosophila melanogaster.

D. Houle, J. Hey, W. Eanes, 1985, Genetics.

A MULTILOCUS VIEW OF SPECIATION IN THE DROSOPHILA VIRILIS SPECIES GROUP REVEALS COMPLEX HISTORIES AND TAXONOMIC CONFLICTS

J. Hey, H. Hilton, 1997 .

Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi.

Jeremy D. Raincrow, J. Hey, Y. Won, 2006, Molecular biology and evolution.

On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence

J. Hey, Y. Won, Yong Wang, 2005, Proceedings of the National Academy of Sciences of the United States of America.

The limitsof selection duringmaizedomestication

J. Doebley, J. Hey, A. Stec, 1999 .

Further resolution of the house mouse (Mus musculus) phylogeny by integration over isolation-with-migration histories

J. Hey, M. Phifer-Rixey, B. Harr, 2020, BMC Evolutionary Biology.

GENETIC VARIATION AND POPULATION STRUCTURE IN WILD ISOLATES OF Caenorhabditis elegans COLLECTED FROM CALIFORNIA by ALIVIA DEY

J. Hey, 2007 .

The ancestor’s tale A pilgrimage to the dawn of evolution

Jody Hey, J. Hey, 2005 .

DNA sequence variation at the period locus reveals the history of species and speciation events in the Drosophila virilis group.

J. Hey, H. Hilton, 1996, Genetics.

The speciation history of Drosophila pseudoobscura and close relatives: inferences from DNA sequence variation at the period locus.

J. Hey, Rong-Lin Wang, R. L. Wang, 1996, Genetics.

Speciation in Drosophila 473 Drosophila pseudoobscura and D . persimilis are a classic species pair for the study of speciation

C. A. Machado, J. Hey, R. Kliman, 2002 .

What's So Hot about Recombination Hotspots?

Jody Hey, J. Hey, 2004, PLoS biology.

Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.

Jody Hey, J. Hey, Arjun Sivasundar, 2003, Genetics.

The effect of undetected recombination on genealogy sampling and inference under an isolation‐with‐migration model

J. Hey, Katherine Wang, 2019, Molecular ecology resources.

On the nonidentifiability of migration time estimates in isolation with migration models

V. Sousa, A. Grelaud, J. Hey, 2011, Molecular ecology.

Age distributions of rare lineages reveal recent demographic history and selection

Alexander Platt, J. Hey, 2018, bioRxiv.

Testing speciation models with DNA sequence data

J. Wakeley, J. Hey, 1998 .

Bridging phylogenetics and population genetics with gene tree models

J. Hey, 1994 .

Restriction-map variation associated with the G6PD polymorphism in natural populations of Drosophila melanogaster.

J. Ajioka, J. Hey, W. Eanes, 1989, Molecular biology and evolution.

Apparent Variation in Neanderthal Admixture among African Populations is Consistent with Gene Flow from Non-African Populations

S. Tishkoff, Jinchuan Xing, J. Hey, 2013, Genome biology and evolution.

The transposable portion of the genome of Drosophila algonquin is very different from that in D. melanogaster.

J. Hey, 1989, Molecular biology and evolution.

The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses

Apeksha Sukesh Kallur, J. Hey, Jared G. Knoblauch, 2021, Molecular biology and evolution.

A population genetic assessment of taxonomic species: The case of Lake Malawi cichlid fishes

J. Hey, C. Pinho, V. Cardoso, 2019, Molecular ecology resources.

Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret.

J. Hey, R. Kliman, 2003, Genetical research.

Sex-ratio changes in Leptopilina heterotoma in response to inbreeding

J. Hey, M. Gargiulo, 1985 .

LET US APPRECIATE EVOLVING GENES1

J. Hey, 2001 .

The neutralist, the fly and the selectionist.

J. Hey, Hey, 1999, Trends in ecology & evolution.

Speciation via hybrid dysgenesis: negative evidence from the Drosophila affinis subgroup

J. Hey, Jody Hey, 2004, Genetica.

Genes, categories, and species : the evolutionary and cognitive causes of the species problem

J. Hey, 2001 .

Population genetics and human origins--haplotypes are key!

J. Hey, 1998, Trends in genetics : TIG.

Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species.

J. Hey, A. Sivasundar, 2003, Genetics.

Identification of Cichlid Fishes from Lake Malawi Using Computer Vision

Jody Hey, Deokjin Joo, Catarina Pinho, 2013, PloS one.

The Population Recombination Rate P ( Incongruent and 1

J. Wakeley, J. Hey, 2002 .

Isolation with migration models for more than two populations.

J. Hey, 2010, Molecular biology and evolution.

X chromosome evidence for ancient human histories.

J. Hey, E. Harris, 1999, Proceedings of the National Academy of Sciences of the United States of America.

The Popgen Pipeline Platform: A Software Platform for Facilitating Population Genomic Analyses

Jody Hey, Andrew E Webb, Jared Knoblauch, 2019, bioRxiv.