Chih-Yu Chen

发表

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features

Jennifer A. Mitchell, Q. Morris, Chih-Yu Chen, 2012, BMC Genomics.

On the identification of potential regulatory variants within genome wide association candidate SNP sets

W. Wasserman, C. Hsiung, I. Chang, 2014, BMC Medical Genomics.

Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis

Von-Wun Soo, Chih-Yu Chen, Chi-Li Kuo, 2005, Systems Biology and Regulatory Genomics.

Nuclear RNA Sequencing of the Mouse Erythroid Cell Transcriptome

Ieuan Clay, Stefan Schoenfelder, Peter Fraser, 2012, PloS one.

A Bayesian measurement error model for two-channel cell-based RNAi data with replicates

C. Hsiung, I. Chang, Chih-Yu Chen, 2012, 1203.4445.

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

David J. Arenillas, Andrea J. Korecki, E. Simpson, 2016, Molecular therapy. Methods & clinical development.

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

David J. Arenillas, Carolyn J. Brown, Piero Carninci, 2016, bioRxiv.

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

David J. Arenillas, Carolyn J. Brown, Piero Carninci, 2016, Scientific Reports.

Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains

Carolyn J. Brown, W. Wasserman, M. Kobor, 2013, Human molecular genetics.

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Chih-Yu Chen, 2015, Nucleic Acids Res..

SnRK1A-Interacting Negative Regulators Modulate the Nutrient Starvation Signaling Sensor SnRK1 in Source-Sink Communication in Cereal Seedlings under Abiotic Stress [C] [W]

Chih-Yu Chen, Chung-An Lu, K. Lee, 2014, Plant Cell.

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

David J. Arenillas, Wyeth W. Wasserman, Chih-Yu Chen, 2013, Nucleic Acids Res..

The identification of cis-regulatory elements: A review from a machine learning perspective

Chih-Yu Chen, Wyeth W Wasserman, Yifeng Li, 2015, Biosyst..

Upstream Distal Regulatory Elements Contact the Lmo2 Promoter in Mouse Erythroid Cells

Jennifer A. Mitchell, S. Ho, Chih-Yu Chen, 2012, PloS one.

Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters

Wyeth W. Wasserman, Yifeng Li, Chih-Yu Chen, 2015, RECOMB.

Identifying Tissue Specific Distal Regulatory Sequences in the Mouse Genome

Chih-Yu Chen, 2011 .

Chronic treatment with aripiprazole induces differential gene expression in the rat frontal cortex.

C. Hsiung, Yu-Chieh Liao, Chih-Yu Chen, 2008, The international journal of neuropsychopharmacology.

The identification of cis-regulatory elements: A review from a machine learning perspective

W. Wasserman, Chih-Yu Chen, Yifeng Li, 2015, Biosyst..

On the identification of potential regulatory variants within genome wide association candidate SNP sets

W. Wasserman, C. Hsiung, I. Chang, 2014, BMC Medical Genomics.

a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, A. Sandelin, W. Wasserman, 2015 .

a major expansion and update of the open-access database of transcription factor binding profiles

David J. Arenillas, A. Sandelin, W. Wasserman, 2015 .