E. Wingender

发表

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.

T. Werner, K. Quandt, K. Frech, 1995, Nucleic acids research.

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Suzanne M. Paley, 2010, Nature Biotechnology.

A compilation of composite regulatory elements affecting gene transcription in vertebrates.

E. Wingender, O. Kel, A. G. Romaschenko, 1995, Nucleic acids research.

MATCH: A tool for searching transcription factor binding sites in DNA sequences.

E. Wingender, A. Kel, E. Gößling, 2003, Nucleic acids research.

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

Daniel Marcu, Xin Gao, Sophia Ananiadou, 2020, npj Systems Biology and Applications.

TRANSFAC®: transcriptional regulation, from patterns to profiles

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2003, Nucleic Acids Res..

Compilation of transcription regulating proteins.

E. Wingender, E. Wingender, 1988, Nucleic acids research.

CLASSIFICATION SCHEME OF EUKARYOTIC TRANSCRIPTION FACTORS

E. Wingender, 1997 .

Transcription complexes for various class III genes differ in parameters of formation and stability towards salt.

E. Wingender, D. Jahn, K. Seifart, 1987, Journal of molecular biology.

Purification of human transcription factor IIIA and its interaction with a chemically synthesized gene encoding human 5 S rRNA.

E. Wingender, D. Jahn, K. Seifart, 1989, The Journal of biological chemistry.

Topology of mammalian transcription networks.

E. Wingender, A. Potapov, N. Voss, 2005, Genome informatics. International Conference on Genome Informatics.

The Second Workshop on Ontology and Genome

T. Takagi, E. Wingender, T. Takai-Igarashi, 2004 .

Integrative content-driven concepts for bioinformatics “beyond the cell”

E. Wingender, A. Kel, O. Kel-Margoulis, 2007, Journal of Biosciences.

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells.

E. Wingender, A. Kel, O. Kel-Margoulis, 1999, Journal of molecular biology.

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.

Michael Ruogu Zhang, M. Q. Zhang, P. Farnham, 2001, Journal of molecular biology.

[Classification of eukaryotic transcription factors].

E. Wingender, 1997, Molekuliarnaia biologiia.

Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites.

P. Bucher, T. Werner, E. Wingender, 2000, Journal of molecular biology.

Isolation and Analysis of Gene Regulatory Sequences

Nils Ole Steffens, E. Wingender, R. Hehl, 2004 .

Identification of dominant signaling pathways from proteomics expression data.

E. Wingender, M. Savitski, A. Kel, 2008, Journal of proteomics.

Defined Engineered Human Myocardium With Advanced Maturation for Applications in Heart Failure Modeling and Repair

M. Goumans, L. V. Van Laake, E. Wingender, 2017, Circulation.

The human immunodeficiency virus type 1 encoded Vpu protein is phosphorylated by casein kinase-2 (CK-2) at positions Ser52 and Ser56 within a predicted alpha-helix-turn-alpha-helix-motif.

E. Wingender, P. Henklein, U. Schubert, 1994, Journal of molecular biology.

The Human Immunodeficiency Virus Type 1 Encoded Vpu Protein is Phosphorylated by Casein Kinase-2 (CK-2) at Positions Ser52 and Ser56 within a Predicted α-Helix-Turn-α-Helix-Motif

E. Wingender, P. Henklein, U. Schubert, 1994 .

BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation

Gary D. Bader, Christopher W. V. Hogue, Edgar Wingender, 2005 .

ExPlain™: finding upstream drug targets in disease gene regulatory networks

E. Wingender, A. Kel, O. Kel-Margoulis, 2008, SAR and QSAR in environmental research.

Consistent re-modeling of signaling pathways and its implementation in the TRANSPATH database.

Edgar Wingender, Mathias Krull, Torsten Crass, 2004, Genome informatics. International Conference on Genome Informatics.

Computational Detection of Stage-Specific Transcription Factor Clusters during Heart Development

E. Wingender, Mehmet Gültas, W. Zimmermann, 2016, Front. Genet..

Integration of gene expression data with prior knowledge for network analysis and validation

E. Wingender, M. Ante, Mathias Fuchs, 2011, BMC Research Notes.

Recognition of regulatory regions in genomic sequences.

E. Wingender, E Wingender, Edgar Wingender, 1994, Journal of biotechnology.

Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms

T. Heinemeyer, Xin Chen, Holger Karas, 1999, Nucleic Acids Res..

Modeling regulatory pathways with the use of the TRANSFAC system

E. Wingender, 2002 .

Simulation of the Dynamics of Gene Networks Regulating the Cell Cycle in Mammalian Cells

E. Wingender, A. Kel, O. Kel-Margoulis, 2003, Russian Journal of Genetics.

The TGF-β–Smad network: introducing bioinformatic tools

E. Wingender, D. Kloos, Claudia Choi, 2002 .

Computational Identification of Key Regulators in Two Different Colorectal Cancer Cell Lines

T. Beißbarth, E. Wingender, Martin Haubrock, 2016, Front. Genet..

The structure of human parathyroid hormone from a study of fragments in solution using 1H NMR spectroscopy and its biological implications.

W. Gronwald, E. Wingender, D. Schomburg, 1994, Biochemistry.

Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs).

E. Wingender, I. Reuter, J. Bode, 2002, Nucleic acids research.

A database framework for mapping expression patterns

Xin Chen, Holger Karas, Ingmar Reuter, 1999, German Conference on Bioinformatics.

From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2004, German Conference on Bioinformatics.

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Gary D. Bader, Frank Schacherer, Edgar Wingender, 2010 .

Identification of the significant conformational features of functional sites in B-DNA

Alexander E. Kel, Edgar Wingender, Nikolay A. Kolchanov, 1997, German Conference on Bioinformatics.

The TRANSFAC database and consind program as tools for describing and understanding regulatory functions of the genome

Holger Karas, Edgar Wingender, Thomas Werner, 1995 .

Preface: The Second Workshop on Ontology and Genome

Edgar Wingender, Toshihisa Takagi, Takako Takai-Igarashi, 2003, Silico Biol..

Advanced Computational Biology Methods Identify Molecular Switches for Malignancy in an EGF Mouse Model of Liver Cancer

J. Borlak, E. Wingender, A. Kel, 2011, PloS one.

TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2001, German Conference on Bioinformatics.

A Novel Computational Approach for the Prediction of Networked Transcription Factors of Aryl Hydrocarbon-Receptor-Regulated Genes

Edgar Wingender, Jürgen Borlak, Susanne Reymann, 2004, Molecular Pharmacology.

DATABASES ON GENE REGULATION

Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, 2005 .

Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

Edgar Wingender, E. Wingender, E. Shelest, 2005, Theoretical Biology and Medical Modelling.

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

Modeling the Architecture of Regulatory Networks

Edgar Wingender, Anatolij Potapov, E. Wingender, 2001, German Conference on Bioinformatics.

“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data

Alexander E. Kel, Edgar Wingender, Philip Stegmaier, 2015, Microarrays.

High-Throughput Profiling of Colorectal Cancer Liver Metastases Reveals Intra- and Inter-Patient Heterogeneity in the EGFR and WNT Pathways Associated with Clinical Outcome

S. Wiemann, T. Beißbarth, E. Wingender, 2022, Cancers.

Databases and Tools for in silico Analysis of Regulation of Gene Expression

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2005 .

Computer analysis of the structure of transcription factor binding sites

Yury V. Kondrakhin, Ph. A. Kolpakov, E. Wingender, 1995 .

Cytomer: A database on gene expression sources

Edgar Wingender, Ellen Fricke, Sigrid Land, 2001, German Conference on Bioinformatics.

Computer-assisted methods for the identification and characterization of polymerase II promoters.

T. Werner, E. Wingender, I. Reuter, 1998, Genetic engineering.

The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH

Edgar Wingender, Claudia Choi, Dorothee-U. Kloos, 2001, German Conference on Bioinformatics.

Method for Recognition of Composite Regulatory Units in Promoters . Analysis of Cell-Cycle Control Genes

E. Wingender, A. Kel, O. Kel-Margoulis, 2000 .

Preface - Third "Ontology Workshop on Ontology and Genomes"

Edgar Wingender, Toshihisa Takagi, Holger Michael, 2004, Silico Biol..

E2F composite units in promoters of cell cycle genes

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 1999, German Conference on Bioinformatics.

Sequence analysis Evaluating phylogenetic footprinting for human – rodent comparisons

E. Wingender, E. Shelest, Tilman Sauer, 2006 .

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

T. Beißbarth, E. Wingender, A. Kel, 2020, Frontiers in Genetics.

BioPAX – A community standard for pathway data sharing

Gary D Bader, Alexander R. Pico, Joanne S. Luciano, 2010, Nature Biotechnology.

The integrated TRANSFAC system as a basis for modeling the architecture of gene regulatory networks

Frank Schacherer, Edgar Wingender, Klaus Seidl, 2001, German Conference on Bioinformatics.

Transcription regulation regions revealed by Signal detection and fuzzy clusterfng

Frank Klawonn, Ingmar Reuter, Edgar Wingender, 1997, German Conference on Bioinformatics.

NF-Y Binding Site Architecture Defines a C-Fos Targeted Promoter Class

E. Wingender, Martin Haubrock, Fabian Hartmann, 2016, PloS one.

Influence of cysteine-specific labels upon the stability of nucleosomes

E. Wingender, J. Bode, K. Maass, 1981 .

In Memory of Dan Prestridge

Edgar Wingender, Thomas Werner, E. Wingender, 2000, Silico Biol..

Constructing a promoter model for antibacterial response of lung epithelial cells

E. Wingender, A. Kel, E. Shelest, 2003 .

The Transpath Signal Transduction Database

Frank Schacherer, Edgar Wingender, E. Wingender, 1999, German Conference on Bioinformatics.

Frontmatter, Table of Contents, Preface, Conference Organization

Martin Kollmar, Edgar Wingender, Tim Beißbarth, 2013, German Conference on Bioinformatics.

ISB: Just another journal?

Edgar Wingender, E. Wingender, 1998, Silico Biol..

Complete synthesis and transcription in vitro of a gene coding for human ribosomal 5S RNA.

E. Wingender, H. Blöcker, D. Jahn, 1988, Gene.

Association of RNA polymerase III with transcription factors in the absence of DNA.

E. Wingender, D. Jahn, K. Seifart, 1986, The Journal of biological chemistry.

Isolation of a transcription complex for ribosomal 5S RNA.

E. Wingender, K. Seifart, X. P. Shi, 1984, The EMBO journal.

INTEGRATING THE KNOWLEDGE ON GENE REGULATION BY A FEDERATED DATABASE APPROACH : TRANSFAC, TRRD, AND COMPEL

Holger Karas, Alexander E. Kel, Nikolay A. Kolchanov, 1997 .

Computer science and biology: Proceedings of the German Conference on Bioinformatics, GCB 2001, October 7-10, 2001, Braunschweig, Germany

Edgar Wingender, E. Wingender, 2001, German Conference on Bioinformatics.

The German Conference on Bioinformatics 2001

Edgar Wingender, E. Wingender, 2002, Silico Biol..

Multi-omics “upstream analysis” of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2016, EuPA open proteomics.

-PheGe- a novel concept for in-silico analyses of genotype/phenotype relations

Edgar Wingender, Klaus Seidl, E. Wingender, 2001, German Conference on Bioinformatics.

TRANSPATH, TRANSFAC and CYTOMER as starting points for an ontology of regulatory networks

Edgar Wingender, E. Wingender, 2003, Silico Biol..

Fluorescamine and fluorescein: a new energy-transfer pair and its application to the binding of histone H5 to nucleosomes.

E. Wingender, 1982, Analytical biochemistry.

New perspectives in the differentiation of bone-forming cells.

E. Wingender, A. Scutt, H. Mayer, 1992, BioFactors.

Activation of nuclear factor‐κB in macrophages by mycoplasmal lipopeptides

E. Wingender, G. Jung, R. Süssmuth, 1998 .

TRANSFAC (cid:1) and its module TRANSCompel (cid:1) : transcriptional gene regulation in eukaryotes

E. Wingender, K. Hornischer, A. Kel, 2005 .

Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2000, German Conference on Bioinformatics.

TRANSFAC: an integrated system for gene expression regulation

Xin Chen, Holger Karas, Ines Liebich, 2000, Nucleic Acids Res..

Regulation of Glutathione Peroxidases

E. Wingender, R. Brigelius-Flohé, L. Flohé, 1997 .

Systems Biology of Transcription Regulation

Joerg Linde, Ekaterina Shelest, Edgar Wingender, 2016 .

TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes

Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, 2005, Nucleic Acids Res..

International Program Committee/Local Organizing Committee/Sponsors

Italy, P. Frasconi, L. Milanesi, 2013 .

Organization and sequence of the gene encoding the human acrosin-trypsin inhibitor (HUSI-II).

K. Grzeschik, E. Wingender, E. Fink, 1993, Gene.

Organization and sequence ofthe gene encoding the human acrosin trypsin inhibitor (HUSI-II)* (Kazal-type inhibitor; acrosin inhibitor; exon-intron mapping; nucleotide sequence analysis; transcription start point; chromosomallocalization; glycoprotein hormones; chorionic gonadotropin)

K. Grzeschik, E. Wingender, E. Fink, 1993 .

Studies on the production of human parathyroid hormone by recombinant Escherichia coli

E. Wingender, W. Deckwer, E. Sanders, 1993, Applied Microbiology and Biotechnology.

TiProD: the Tissue-specific Promoter Database

Xin Chen, Alexander E. Kel, Edgar Wingender, 2005, Nucleic Acids Res..

Identifying cell-specific microRNA transcriptional start sites

Jie Li, Jin Wang, Edgar Wingender, 2016, Bioinform..

The architecture of the gene regulatory networks of different tissues

Jie Li, Jin Wang, Edgar Wingender, 2012, Bioinform..

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes

E. Wingender, A. Mukhopadhyay, Martin Haubrock, 2015, BMC Bioinformatics.

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell

E. Wingender, S. Bandyopadhyay, U. Maulik, 2013, Algorithms for Molecular Biology.

δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data

Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, 2012, WABI.

TFClass: an expandable hierarchical classification of human transcription factors

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2012, Nucleic Acids Res..

Composition-sensitive analysis of the human genome for regulatory signals

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2003, Silico Biol..

TRANSFAC: a database on transcription factors and their DNA binding sites

Holger Karas, Edgar Wingender, Rainer Knüppel, 1996, Nucleic Acids Res..

MATCHTM: a tool for searching transcription factor binding sites in DNA sequences

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2003, Nucleic Acids Res..

Removing Background Co-occurrences of Transcription Factor Binding Sites Greatly Improves the Prediction of Specific Transcription Factor Cooperations

Edgar Wingender, Mehmet Gültas, Cornelia Meckbach, 2018, Front. Genet..

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information

Edgar Wingender, Stephan Waack, Xu Hua, 2015, BMC Bioinformatics.

Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems

Edgar Wingender, Tim Beißbarth, Klaus Jung, 2013, Comput. Methods Programs Biomed..

TFClass: a classification of human transcription factors and their rodent orthologs

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2014, Nucleic Acids Res..

Faithful transcription of ribosomal 5-S RNA in vitro depends on the presence of several factors.

E. Wingender, K. Seifart, X. P. Shi, 1983, European journal of biochemistry.

Evaluating phylogenetic footprinting for human-rodent comparisons

Edgar Wingender, Tilman Sauer, Ekaterina Shelest, 2006, Bioinform..

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network

Jie Li, Jin Wang, Edgar Wingender, 2011, BMC Systems Biology.

Systematic DNA-binding domain classification of transcription factors.

Edgar Wingender, Philip Stegmaier, Alexander E Kel, 2004, Genome informatics. International Conference on Genome Informatics.

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL

T. Heinemeyer, Alexander E. Kel, Olga V. Kel-Margoulis, 1998, Nucleic Acids Res..

Constructing temporal regulatory cascades in the context of development and cell differentiation

Tim Beißbarth, Martin Haubrock, Edgar Wingender, 2020, PloS one.

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell

Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, 2013, Algorithms for Molecular Biology.

The TRANSFAC system on gene expression regulation

Xin Chen, Ines Liebich, Frank Schacherer, 2001, Nucleic Acids Res..

Expression of the RT6 mono(ADP-ribosyl)transferases is regulated by two promoter regions.

E. Wingender, G. Kuhlenbäumer, F. Koch-Nolte, 1997, Advances in experimental medicine and biology.

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

Edgar Wingender, E. Wingender, 2008, Briefings Bioinform..

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines

Edgar Wingender, Xu Hua, Jin Wang, 2017, Nucleic Acids Res..

TRANSPATH: An integrated database on signal transduction and a tool for array analysis

Edgar Wingender, Mathias Krull, Anatolij Potapov, 2003, Nucleic Acids Res..

The TRANSPATH signal transduction database: a knowledge base on signal transduction networks

Frank Schacherer, Edgar Wingender, Mathias Krull, 2001, Bioinform..

TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2005, Nucleic Acids Res..

Modulation of the nucleosome structure by histone acetylation.

E. Wingender, J. Bode, K. Henco, 1980, European journal of biochemistry.

Parameters affecting the superreactivity of the cysteine side chain in histone H3. Characterization of a 32-amino-acid peptide including Cys-110.

E. Wingender, J. Bode, K. Plank, 1982, European journal of biochemistry.

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

E. Wingender, A. Kel, O. Kel-Margoulis, 2013, BMC Bioinformatics.

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2013, BMC Bioinformatics.

Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm

E. Wingender, A. Kel, E. Cheremushkin, 2006, Nucleic Acids Res..

Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods

Alexander E. Kel, Edgar Wingender, Ekaterina Shelest, 2003, Silico Biol..

TRANSCompel®: a database on composite regulatory elements in eukaryotic genes

Alexander E. Kel, Olga V. Kel-Margoulis, Ingmar Reuter, 2002, Nucleic Acids Res..

Text mining-based word representations for biomedical data analysis and machine learning tasks

Tim Beißbarth, Halima Alachram, Hryhorii Chereda, 2020, bioRxiv.

Molecular mechanistic associations of human diseases

Alexander E. Kel, Edgar Wingender, Mathias Krull, 2010, BMC Systems Biology.

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2006, Bioinform..

Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2005, German Conference on Bioinformatics.

TFClass: expanding the classification of human transcription factors to their mammalian orthologs

Edgar Wingender, Jürgen Dönitz, Torsten Schoeps, 2017, Nucleic Acids Res..

Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming

Edgar Wingender, Sebastian Herzog, Stephan Waack, 2014, BMC Bioinformatics.

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2001, Pacific Symposium on Biocomputing.

S/MARt DB: a database on scaffold/matrix attached regions

Ines Liebich, Edgar Wingender, Jürgen Bode, 2002, Nucleic Acids Res..

TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins

R. KNÜPPEL, P. DIETZE, W. LEHNBERG, 1994, J. Comput. Biol..

Expression of human parathyroid hormone in Escherichia coli.

E. Wingender, H. Blöcker, H. Mayer, 1989, Journal of Biological Chemistry.

Parathyroid Hormone-related Protein Antagonizes the Action of Parathyroid Hormone on Adult Cardiomyocytes (*)

E. Wingender, K. Schlüter, H. Piper, 1996, The Journal of Biological Chemistry.

Structure of recombinant human parathyroid hormone in solution using multidimensional NMR spectroscopy.

D Schomburg, W. Gronwald, E. Wingender, 1996, Biological chemistry Hoppe-Seyler.

Large-scale preparation and biological activity of recombinant human parathyroid hormone.

E. Wingender, J. Paulsen, H. Mayer, 1995, Journal of biotechnology.

Production of human parathyroid hormone by recombinant Escherichia coli TG1 on synthetic medium.

E. Wingender, W. Deckwer, E. Sanders, 1994, Journal of biotechnology.

TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks.

Edgar Wingender, E. Wingender, 2004, In silico biology.

COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2000, Nucleic Acids Res..

Activation of nuclear factor-kappaB in macrophages by mycoplasmal lipopeptides.

E. Wingender, G. Jung, R. Süssmuth, 1998, European journal of immunology.

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation

T. Heinemeyer, Holger Karas, Alexander E. Kel, 1997, Nucleic Acids Res..

The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks

Edgar Wingender, Björn Goemann, Anatolij Potapov, 2008, BMC Bioinformatics.

The central part of parathyroid hormone stimulates thymidine incorporation of chondrocytes.

E. Wingender, K. Schlüter, H. Hellstern, 1989, The Journal of biological chemistry.

Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences

Alexander E. Kel, Edgar Wingender, Luciano Milanesi, 1995, ISMB.

Transcription in Eukaryotes—The Role of Transcription Complexes and Their Components

E. Wingender, K. Seifart, 1987 .

EndoNet: an information resource about the intercellular signaling network

Edgar Wingender, Jürgen Dönitz, E. Wingender, 2014, BMC Systems Biology.

Stimulation of cell proliferation in skeletal tissues of the rat by defined parathyroid hormone fragments.

E. Wingender, K. Schlüter, D. Sömjen, 1991, Biochemical Journal.

Stimulation by defined parathyroid hormone fragments of cell proliferation in skeletal-derived cell cultures.

E. Wingender, K. Schlüter, D. Sömjen, 1990, The Biochemical journal.

Investigation of the solution structure of the human parathyroid hormone fragment (1-34) by 1H NMR spectroscopy, distance geometry, and molecular dynamics calculations.

D Schomburg, E. Wingender, D. Schomburg, 1991, Biochemistry.

Presenting Human Embryology in an International Open-Access Reference Centre (HERC)

E. Wingender, C. Viebahn, O. Rienhoff, 2012 .

Beyond microarrays: Finding key transcription factors controlling signal transduction pathways

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2006, BMC Bioinformatics.

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources

Martin Vingron, Christian von Mering, Ines Liebich, 2004, Bioinform..

PRODORIC: prokaryotic database of gene regulation

Edgar Wingender, Simone Linz, Dieter Jahn, 2003, Nucleic Acids Res..

TRANSFAC database as a bridge between sequence data libraries and biological function.

H. Karas, E. Wingender, H Karas, 1997, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Transcription regulatory region analysis using signal detection and fuzzy clustering

Frank Klawonn, Ingmar Reuter, Edgar Wingender, 1998, Bioinform..

Topological peculiarities of mammalian networks with different functionalities: transcription, signal transduction and metabolic networks

Edgar Wingender, Anatolij P. Potapov, Björn Goemann, 2011 .

Synthesis and properties of the new thiol-specific reagent difluorescein disulfide: its application on histone-histone and histone-DNA interactions.

E. Wingender, A. Arellano, 1982, Analytical biochemistry.

Integrating Pathway Data for Systems Pathology

Olga V. Kel-Margoulis, Frank Schacherer, Edgar Wingender, 2007, Silico Biol..

The promoter of the human parathyroid hormone gene contains a functional cyclic AMP-response element.

E. Wingender, E Wingender, H Mayer, 1990, Nucleic acids research.

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information

E. Wingender, Mehmet Gültas, S. Waack, 2015, BMC Bioinformatics.

Building a knowledge base for systems pathology

Alexander E. Kel, Olga V. Kel-Margoulis, Frank Schacherer, 2008, Briefings Bioinform..

Transcription regulating proteins and their recognition sequences.

E. Wingender, E Wingender, 1990, Critical reviews in eukaryotic gene expression.

EndoNet: an information resource about regulatory networks of cell-to-cell communication†

Edgar Wingender, Jürgen Dönitz, Holger Michael, 2007, Nucleic Acids Res..

Comparative analysis of topological patterns in different mammalian networks.

Edgar Wingender, Bjoern Goemann, Anatolij P Potapov, 2009, Genome informatics. International Conference on Genome Informatics.

An approach to evaluate the topological significance of motifs and other patterns in regulatory networks

Edgar Wingender, Björn Goemann, Anatolij Potapov, 2009, BMC Systems Biology.

Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks

Jie Li, Edgar Wingender, Martin Haubrock, 2012, BMC Systems Biology.

A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs

Alexander E. Kel, Edgar Wingender, Jürgen Borlak, 2013, PLoS Comput. Biol..

TRANSPATH: An integrated database on signal transduction and a tool for array analysis

E. Wingender, A. Potapov, N. Voss, 2003, Nucleic Acids Res..

Integrated databases and computer systems for studying eukaryotic gene expression

Edgar Wingender, Luciano Milanesi, G. Christian Overton, 1999, Bioinform..

geneXplainR: An R interface for the geneXplain platform

Alexander E. Kel, Edgar Wingender, Philip Stegmaier, 2017, J. Open Source Softw..

Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements

Holger Karas, Edgar Wingender, Rainer Knüppel, 1996, Comput. Appl. Biosci..

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer

Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender, 2019, BMC Bioinformatics.

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome

T. Heinemeyer, Alexander E. Kel, Edgar Wingender, 1998, ISMB.

Eukaryotic regulatory sequences

E. Wingender, M. Krull, 2005 .

Structural changes in condylar cartilage following prolonged exposure to the human parathyroid hormone fragment (hPTH) 1–34 in vitro

E. Wingender, M. Silbermann, R. Shurtz-Swirski, 1992, Cell and Tissue Research.

Criteria for an updated Classification of Human transcription factor DNA-binding Domains

Edgar Wingender, E. Wingender, 2013, J. Bioinform. Comput. Biol..

Biological petri nets

Edgar Wingender, E. Wingender, 2017 .

TRANSFAC®: transcriptional regulation, from patterns to profiles

E. Wingender, R. Geffers, K. Hornischer, 2003, Nucleic Acids Res..

EndoNet: an information resource about endocrine networks

Ines Liebich, Edgar Wingender, Jürgen Dönitz, 2005, Nucleic Acids Res..

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

E. Wingender, A. Kel, E. Cheremushkin, 2006, Bioinform..

TRANSPATH®: a high quality database focused on signal transduction : Data integration in functional genomics and proteomics: application to biological pathways

Edgar Wingender, Mathias Krull, Anatolij Potapov, 2004 .

Molecular mechanistic associations of human diseases

E. Wingender, A. Kel, N. Voss, 2010, BMC Systems Biology.

Inhomogeneous Parsimonious Markov Models

Edgar Wingender, Ivo Grosse, Ralf Eggeling, 2013, ECML/PKDD.