D. Goodsell

Margaret A Franzen, D. Goodsell, Timothy M. Herman, 2006, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

The molecular perspective: ultraviolet light and pyrimidine dimers.

D. Goodsell, 2001, Stem cells.

The Universe of Protein Folds

D. Goodsell, 2016 .

Insights from 20 years of the Molecule of the Month

D. Goodsell, H. Berman, S. Burley, 2020, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Impact of the Protein Data Bank Across Scientific Disciplines

D. Goodsell, J. Westbrook, S. Burley, 2020, Data Sci. J..

The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology

David S. Goodsell, Helen M. Berman, Stephen K. Burley, 2015, PLoS biology.

RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules

David S. Goodsell, Stephen K. Burley, Shuchismita Dutta, 2016 .

Insights from 20 Years of the Molecule of the Month and PDB‐101

D. Goodsell, H. Berman, S. Burley, 2020 .

Art and Science of the Cellular Mesoscale.

Stefano Forli, David S Goodsell, Arthur J Olson, 2020, Trends in biochemical sciences.

Molecular applications of volume rendering and 3-D texture maps

D. Goodsell, A. Olson, 1989, VVS '89.

Miniseries: Illustrating the Machinery of Life

D. Goodsell, David S. Goodsell, David S. Goodsell, 2009 .

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

D. Goodsell, S. Burley, 2020, Oncogene.

Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket

D. Goodsell, A. Olson, S. Sarafianos, 2019, mBio.

GENERAL NATURE OF THE GENETIC CODE FOR PROTEINS

D. Goodsell, 2004 .

Grid-Based Hydrogen Bond Potentials with Improved Directionality

David S. Goodsell, Arthur J. Olson, Ruth Huey, 2004 .

A visual review of the human pathogen Streptococcus pneumoniae.

Rikke Schmidt Kjærgaard, D. Goodsell, E. Andersen, 2017, FEMS microbiology reviews.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

Joseph H. Lubin, Jonathan K. Williams, Bonnie L. Hall, 2020, bioRxiv.

The Effects of the SUN Project on Teacher Knowledge and Self-Efficacy Regarding Biological Energy Transfer Are Significant and Long-Lasting: Results of a Randomized Controlled Trial

D. Goodsell, Bo Zhang, A. Batiza, 2013, CBE life sciences education.

The molecular perspective: cyclins.

D. Goodsell, 2004, Stem cells.

The Molecular Perspective: Cyclins

D. Goodsell, 2004 .

Computer-linked autofabricated 3D models for teaching structural biology

David S. Goodsell, Michel F. Sanner, Arthur J. Olson, 2004, SIGGRAPH '04.

Sequence recognition of DNA by lexitropsins.

D. Goodsell, 2001, Current medicinal chemistry.

The Molecular Perspective: Cyclins

D. Goodsell, 2004, The oncologist.

The Molecular Perspective: Polycyclic Aromatic Hydrocarbons

D. Goodsell, 2004, Stem cells.

The molecular perspective: polycyclic aromatic hydrocarbons.

D. Goodsell, 2004, The oncologist.

The molecular perspective: the src oncogene.

D. Goodsell, 1999, The oncologist.

Art as a tool for science

D. Goodsell, 2021, Nature Structural & Molecular Biology.

Covalent docking using autodock: Two‐point attractor and flexible side chain methods

Stefano Forli, David S Goodsell, Arthur J Olson, 2016, Protein science : a publication of the Protein Society.

Artophagy: The Art of Autophagy-the Cvt pathway

D. Goodsell, D. Klionsky, 2010, Autophagy.

The AutoDock suite at 30

Stefano Forli, David S Goodsell, Arthur J Olson, 2020, Protein science : a publication of the Protein Society.

Integrative modeling of the HIV-1 ribonucleoprotein complex

Stefano Forli, David S Goodsell, Arthur J Olson, 2019, PLoS Comput. Biol..

Structure-based virtual screening and biological evaluation of Mycobacterium tuberculosis adenosine 5'-phosphosulfate reductase inhibitors.

David S Goodsell, Ettore Novellino, Sandro Cosconati, 2008, Journal of medicinal chemistry.

Rapid Diversity‐Oriented Synthesis in Microtiter Plates for In Situ Screening of HIV Protease Inhibitors

David S Goodsell, Chi-Huey Wong, Arthur J Olson, 2003, Chembiochem : a European journal of chemical biology.

Exploring protein symmetry at the RCSB Protein Data Bank

Jose M. Duarte, D. Goodsell, S. Burley, 2022, Emerging topics in life sciences.

From Atoms to Cells: Using Mesoscale Landscapes to Construct Visual Narratives.

David S Goodsell, Margaret A Franzen, Tim Herman, 2018, Journal of molecular biology.

The Future of HIV-1 Therapeutics. Resistance Is Futile?

D. Richman, D. Goodsell, B. Torbett, 2015, Anticancer research.

Redox-based probes for protein tyrosine phosphatases.

David S Goodsell, Kate S Carroll, Kate S. Carroll, 2011, Angewandte Chemie.

Winner of the 2016 Wellcome Image Awards

David S Goodsell, D. Goodsell, 2016, Journal of visual communication in medicine.

Selective and Effective: Current Progress in Computational Structure-Based Drug Discovery of Targeted Covalent Inhibitors.

Stefano Forli, David S Goodsell, Giulia Bianco, 2020, Trends in pharmacological sciences.

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Chenghua Shao, Jose M. Duarte, Christine Zardecki, 2019, Protein science : a publication of the Protein Society.

The Molecular Perspective: Histone Deacetylase

David S Goodsell, D. Goodsell, 2003, Stem cells.

3D molecular models of whole HIV-1 virions generated with cellPACK

David S. Goodsell, Michel F. Sanner, Arthur J. Olson, 2014, Faraday discussions.

From Atoms to Mesoscale Land Construct Visua

D. Goodsell, Timothy Herman, Margaret A. Franze, 2018 .

Cellular Landscapes in Watercolor

D. Goodsell, 2016, The Journal of biocommunication.

Identification of novel β‐secretase inhibitors through the inclusion of protein flexibility in virtual screening calculations

David S. Goodsell, Arthur J. Olson, Ruth Huey, 2008 .

MPD and DNA bending in crystals and in solution.

D. Goodsell, R. Dickerson, M. Kopka, 1996, Journal of molecular biology.

The Machinery of Life

D. Goodsell, 1993, Springer New York.

Automated docking of substrates to proteins by simulated annealing

D. Goodsell, A. Olson, 1990, Proteins.

The molecular perspective: alcohol.

D. Goodsell, 2006, The oncologist.

The art of molecular graphics. The 1998 Molecular Graphics Art Show.

D. Goodsell, 1999, Journal of molecular graphics & modelling.

Integrative illustration of a JCVI-syn3A minimal cell

D. Goodsell, 2022, J. Integr. Bioinform..

The molecular perspective: tissue factor.

D. Goodsell, 2006, The oncologist.

Identifying Protein Binding Sites and Optimal Ligands

D. Goodsell, A. Olson, A. Beuscher, 2005 .

Visualising microorganisms from molecules to cells.

D. Goodsell, D. Haas, 2014, FEMS microbiology letters.

Integrative structural modelling and visualisation of a cellular organelle

D. Goodsell, A. Olson, A. Ekman, 2022, QRB Discovery.

Protein Structures : From Famine to Feast Thousands of protein structures are known and accessible . Structural genomics is building on new technology to fill in the missing pieces .

D. Goodsell, H. Berman, P. Bourne, 2022 .

Ferritin and Transferrin

D. Goodsell, 2002 .

Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.

D. Goodsell, R. Dickerson, M. Kopka, 1984, Journal of molecular biology.

PD-1 (Programmed Cell Death Protein 1)

D. Goodsell, 2016 .

Progress in the design of DNA sequence‐specific lexitropsins

W. L. Walker, D. Goodsell, M. Kopka, 1997, Biopolymers.

Mitochondrion

D. Goodsell, 2020, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

The Molecular Perspective: Restriction Endonucleases

D. Goodsell, 2002, Stem cells.

Representation and Misrepresentation in Biomolecular Science

D. Goodsell, 2007 .

The molecular perspective: the ribosome.

D. Goodsell, 2000, Stem cells.

The Molecular Perspective: The Ribosome

D. Goodsell, 2001, The oncologist.

Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.

D. Goodsell, R. Dickerson, M. Kopka, 1994, Biochemistry.

The molecular perspective: VEGF and angiogenesis.

D. Goodsell, 2002, Stem cells.

The Molecular Perspective: VEGF and Angiogenesis

D. Goodsell, 2003, The oncologist.

The Molecular Perspective: Ubiquitin and the Proteosome

D. Goodsell, 2003, Stem cells.

Auxin and TIR1 Ubiquitin Ligase

D. Goodsell, 2009 .

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Jose M. Duarte, Ben M. Webb, Sai J. Ganesan, 2022, Protein science : a publication of the Protein Society.

The molecular perspective: VEGF and angiogenesis.

D. Goodsell, 2002, The oncologist.

Broadly Neutralizing Antibodies

D. Goodsell, 2014 .

The Molecular Perspective: c‐Abl Tyrosine Kinase

D. Goodsell, 2006, Stem cells.

The molecular perspective: c-Abl tyrosine kinase.

D. Goodsell, 2005, The oncologist.

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Jose M. Duarte, Rachel Kramer Green, Ben M. Webb, 2022, Nucleic Acids Res..

The molecular origin of DNA-drug specificity in netropsin and distamycin.

D. Goodsell, R. Dickerson, M. Kopka, 1985, Proceedings of the National Academy of Sciences of the United States of America.

The Glycolytic Enzymes

D. Goodsell, 2004 .

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.

D. Goodsell, R. Dickerson, M. Kaczor-Grzeskowiak, 1994, Journal of molecular biology.

"...the tyranny of the lattice...".

D. Goodsell, R. Dickerson, S. Neidle, 1994, Proceedings of the National Academy of Sciences of the United States of America.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

David S. Goodsell, Andreas Prlic, Zukang Feng, 2016, Nucleic Acids Res..

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

David S. Goodsell, Michel F. Sanner, Arthur J. Olson, 2009, J. Comput. Chem..

Isohelical analysis of DNA groove-binding drugs.

D. Goodsell, R. Dickerson, R E Dickerson, 1986, Journal of medicinal chemistry.

The molecular perspective: Cisplatin.

D. Goodsell, 2006, Stem cells.

The Molecular Perspective: Cisplatin

D. Goodsell, 2006, The oncologist.

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function

David S. Goodsell, Arthur J. Olson, William E. Hart, 1998, J. Comput. Chem..

The structure of DAPI bound to DNA.

D S Goodsell, D. Goodsell, R. Dickerson, 1989, Journal of biomolecular structure & dynamics.

HIV-1 Protease

D. Goodsell, 2000 .

Computational protein–ligand docking and virtual drug screening with the AutoDock suite

Ruth Huey, Stefano Forli, David S Goodsell, 2016, Nature Protocols.

Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.

D. Goodsell, R. Dickerson, M. Kopka, 1995, Biochemistry.

Drugs and Minor Groove Binding in B-DNA: Netropsin and Hoechst 33258

D. Goodsell, R. Dickerson, M. Kopka, 1987 .

Design of stapled DNA-minor-groove-binding molecules with a mutable atom simulated annealing method

David S. Goodsell, Richard E. Dickerson, Mary L. Kopka, 1997, J. Comput. Aided Mol. Des..

Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.

D S Goodsell, D. Goodsell, R. Dickerson, 1997, Structure.

Automated docking of flexible ligands: Applications of autodock

D S Goodsell, A J Olson, G M Morris, 1996, Journal of molecular recognition : JMR.

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

David S. Goodsell, Zukang Feng, John D. Westbrook, 2020, Nucleic Acids Res..

The molecular perspective: the ras oncogene.

D S Goodsell, D. Goodsell, 1999, The oncologist.

Structure of a dicationic monoimidazole lexitropsin bound to DNA.

H. Ng, D. Goodsell, R. Dickerson, 1995, Biochemistry.

A PRELIMINARY MULTIOBJECTIVE ANALYSIS OF THE CHEMOTHERAPEUTIC BENEFITS OF HAIRPIN-LINKED POLYAMIDES

David S. Goodsell, Richard E. Dickerson, Wynn L. Walker, 1999 .

Estimation of the DNA sequence discriminatory ability of hairpin-linked lexitropsins.

D S Goodsell, W. L. Walker, D. Goodsell, 1997, Proceedings of the National Academy of Sciences of the United States of America.

A semiempirical free energy force field with charge‐based desolvation

David S. Goodsell, Arthur J. Olson, Ruth Huey, 2007, J. Comput. Chem..

Virtual screening with AutoDock: theory and practice

Stefano Forli, David S Goodsell, Sandro Cosconati, 2010, Expert opinion on drug discovery.

The Molecular Perspective: l‐Asparaginase

D. Goodsell, 2005, Stem cells.

Biomolecules and Nanotechnology

David S. Goodsell, D. Goodsell, 2000 .

Protein Data Bank: the single global archive for 3D macromolecular structure data

Cole H. Christie, Jose M. Duarte, Rachel Kramer Green, 2018, Nucleic acids research.

Bionanotechnology: Lessons from Nature

David S. Goodsell, D. Goodsell, 2004 .

The RCSB Protein Data Bank: redesigned web site and web services

David S. Goodsell, Andreas Prlic, Philip E. Bourne, 2010, Nucleic Acids Res..

1,2,3‐Triazole as a Peptide Surrogate in the Rapid Synthesis of HIV‐1 Protease Inhibitors

David S Goodsell, Alexander Wlodawer, Chi-Huey Wong, 2005, Chembiochem : a European journal of chemical biology.

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

David S. Goodsell, Zukang Feng, John D. Westbrook, 2018, Nucleic Acids Res..

Filling in the Gaps: Artistic License in Education and Outreach

David S Goodsell, D. Goodsell, Graham T Johnson, 2007, PLoS biology.

RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens

D. Goodsell, S. Burley, 2021, Structure.

The molecular perspective: hepatitis B virus.

D. Goodsell, 2007, The oncologist.

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4

David S. Goodsell, Arthur J. Olson, Ruth Huey, 1996, J. Comput. Aided Mol. Des..

The Future of HIV-1 Therapeutics

D. Richman, D. Goodsell, B. Torbett, 2015, Current Topics in Microbiology and Immunology.

TATA-Binding Protein

D. Goodsell, 2005 .

Visualizing biological data—now and in the future

Bang Wong, Chris North, Arthur J Olson, 2010, Nature Methods.

Life and Death

D. Goodsell, 2009 .

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

David S. Goodsell, Andreas Prlic, Philip E. Bourne, 2014, Nucleic Acids Res..

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility

David S. Goodsell, Michel F. Sanner, Arthur J. Olson, 2015, PLoS Comput. Biol..

The molecular perspective: tamoxifen and the estrogen receptor.

D. Goodsell, 2002, Stem cells.

PDB‐101: Educational resources supporting molecular explorations through biology and medicine

D. Goodsell, S. Burley, Robert Lowe, 2021, Protein science : a publication of the Protein Society.

The Molecular Perspective: Double‐Stranded DNA Breaks

D. Goodsell, 2005, Stem cells.

The molecular perspective: double-stranded DNA breaks.

D. Goodsell, 2005, The oncologist.

Miniseries: Illustrating the Machinery of Life

David S. Goodsell, D. Goodsell, 2009 .

ePMV embeds molecular modeling into professional animation software environments.

David S. Goodsell, Michel F. Sanner, Ludovic Autin, 2011, Structure.

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Jose M. Duarte, Sai J. Ganesan, A. Sali, 2021, Protein science : a publication of the Protein Society.

The RCSB Protein Data Bank: new resources for research and education

David S. Goodsell, Andreas Prlic, Philip E. Bourne, 2012, Nucleic Acids Res..

Evolution of the SARS‐CoV‐2 proteome in three dimensions (3D) during the first 6 months of the COVID‐19 pandemic

Joseph H. Lubin, Jonathan K. Williams, Bonnie L. Hall, 2021, Proteins.

Automated Docking of Flexible Ligands to Flexible Receptors

David S. Goodsell, Arthur J. Olson, William E. Hart, 2010 .

The Molecular Perspective: The ras Oncogene

D. Goodsell, David S. Goodsell, 1999, Stem cells.

Building Structural Models of a Whole Mycoplasma Cell.

Jonathan R. Karr, D. Goodsell, M. Covert, 2021, Journal of molecular biology.

Integrative visualization of the molecular structure of a cellular microdomain

D. Goodsell, Keren Lasker, 2023, Protein science : a publication of the Protein Society.

Integrative Illustration of Escherichia coli

D. Goodsell, 2022 .

The molecular perspective: estrogen sulfotransferase.

D. Goodsell, 2006, The oncologist.

The Molecular Perspective: Simian Virus 40

D. Goodsell, 2000, Stem cells.

The molecular perspective: major histocompatibility complex.

D. Goodsell, 2005, The oncologist.

Illustrate: Software for Biomolecular Illustration.

Arthur J Olson, Ludovic Autin, David S Goodsell, 2019, Structure.

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments

David S. Goodsell, Arthur J. Olson, Ludovic Autin, 2018, IEEE Computer Graphics and Applications.

Eukaryotic cell panorama

D. Goodsell, 2011, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

The molecular perspective: tumor necrosis factor.

D. Goodsell, 2006, The oncologist.

The Molecular Perspective: Cadherin

D. Goodsell, 2002, The oncologist.

The Molecular Perspective: Antibodies

D. Goodsell, 2001, Stem cells.

Revealing structural views of biology.

D. Goodsell, H. Berman, S. Burley, 2013, Biopolymers.

Atomic Evidence: The Foundations of Structural Molecular Biology

D. Goodsell, 2011, Science progress.

The Molecular Perspective: Targeted Toxins

D. Goodsell, 2001, The oncologist.

The Central Dogma

D. Goodsell, David S. Goodsell, 2016 .

Illustrations of the HIV life cycle.

D. Goodsell, 2015, Current topics in microbiology and immunology.

Automated docking in crystallography: Analysis of the substrates of aconitase

A J Olson, D. Goodsell, A. Olson, 1993, Proteins.

SARS-CoV-2 Spike

D. Goodsell, 2020, RCSB Protein Data Bank.

Amyloid-beta Precursor Protein

D. Goodsell, 2006 .

Fact and Fantasy in Nanotech Imagery

David S. Goodsell, D. Goodsell, 2009, Leonardo.

Seeing the nanoscale

David S. Goodsell, D. Goodsell, 2006 .

The Molecular Perspective: DNA Polymerase

D. Goodsell, 2004, The Oncologist.

The molecular perspective: DNA polymerase.

D. Goodsell, 2004, Stem Cells.

The Molecular Perspective: Cytochrome P450

D. Goodsell, 2001, The oncologist.

The molecular perspective: cytochrome P450.

D. Goodsell, 2001, Stem cells.

Recognition in action: flipping pyrimidine dimers

D. Goodsell, 2005, Journal of molecular recognition : JMR.

The Molecular Perspective: Ultraviolet Light and Pyrimidine Dimers

D. Goodsell, 2001, The oncologist.

The Molecular Perspective: Ultraviolet Light and Pyrimidine Dimers

D. Goodsell, D. S. Goodsell, 2001, The oncologist.

Seeing the PDB

D. Goodsell, J. Richardson, D. Richardson, 2021, The Journal of biological chemistry.

The effect of crystal packing on oligonucleotide double helix structure.

D S Goodsell, D. Goodsell, R. Dickerson, 1987, Journal of biomolecular structure & dynamics.

Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.

Shyam M. Saladi, D. Goodsell, G. Jensen, 2021, Journal of molecular biology.

Computational docking of biomolecular complexes with AutoDock.

David S Goodsell, D. Goodsell, 2009, Cold Spring Harbor protocols.

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

David S. Goodsell, Ivan Viola, Peter Mindek, 2020, IEEE Transactions on Visualization and Computer Graphics.

Integrative Modeling and Visualization of Exosomes

David S. Goodsell, Ludovic Autin, Julia Jiménez, 2019, The Journal of biocommunication.

Crystal structure of CATGGCCATG and its implications for A-tract bending models.

D. Goodsell, R. Dickerson, M. Kopka, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation

David S. Goodsell, Michel F. Sanner, Ludovic Autin, 2020, MolVa@Eurographics/EuroVis.

BioEditor - Simplifying Macromolecular Structure Annotation

David S. Goodsell, Philip E. Bourne, Peng Yang, 2003, Bioinform..

Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.

D. Goodsell, R. Dickerson, K. Grześkowiak, 1995, Biochemistry.

Vascular Endothelial Growth Factor (VegF) Signaling

D. Goodsell, 2022, RCSB Protein Data Bank.

Protein‐Ligand Docking

David S. Goodsell, Garrett M. Morris, Arthur J. Olson, 2000 .

The molecular perspective: matrix metalloproteinase 2.

D S Goodsell, D. Goodsell, 1999, The oncologist.

Illustrating the machinery of life: Viruses

D. Goodsell, 2012, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes

David S. Goodsell, Arthur J. Olson, Richard K. Belew, 2008, J. Comput. Chem..

Molecular storytelling for online structural biology outreach and education.

D. Goodsell, C. Zardecki, S. Dutta, 2021, Structural dynamics.

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences

David S. Goodsell, Helen M. Berman, Shuchismita Dutta, 2010, Journal of applied crystallography.

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments

David S. Goodsell, Ivan Viola, Arthur J. Olson, 2018, IEEE Transactions on Visualization and Computer Graphics.

Instant Construction and Visualization of Crowded Biological Environments

David S. Goodsell, Ivan Viola, Arthur J. Olson, 2018, IEEE Transactions on Visualization and Computer Graphics.

Miniseries: Illustrating the machinery of life mitochondrion*

D. Goodsell, 2010 .

Biomolecules and Nanotechnology

D. Goodsell, 2000, American Scientist.

The evolution of the RCSB Protein Data Bank website

Zukang Feng, Chunxiao Bi, Andreas Prlić, 2011 .

Richard Lerner's Bioinspiration: Biomolecular Visualization and Modeling at Scripps Research

D. Goodsell, M. Sanner, A. Olson, 2023, Israel Journal of Chemistry.

Evaluation of AlphaFold2 structures as docking targets

D. Goodsell, Stefano Forli, Matthew Holcomb, 2022, Protein science : a publication of the Protein Society.

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling

David S. Goodsell, Arthur J. Olson, Garrett M. Morris, 2003, J. Comput. Aided Mol. Des..

The molecular perspective: cyclooxygenase-2.

D. Goodsell, 2000, The Oncologist.

Integrative illustration for coronavirus outreach

D. Goodsell, S. Burley, C. Zardecki, 2020, PLoS biology.

Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.

D. Goodsell, R. Dickerson, M. Kaczor-Grzeskowiak, 1993, Biochemistry.

The Molecular Perspective: Major Histocompatibility Complex

D. Goodsell, 2005, Stem cells.

Lattice Models of Bacterial Nucleoids.

Ludovic Autin, David S Goodsell, Arthur J Olson, 2018, The journal of physical chemistry. B.

Visibility Equalizer Cutaway Visualization of Mesoscopic Biological Models

David S. Goodsell, Ivan Viola, Peter Mindek, 2016, Comput. Graph. Forum.

Protein structure in context: The molecular landscape of angiogenesis

David S Goodsell, Daniel S Sem, Ramani Ramchandran, 2013, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Picturing science: using art and imagination to explore new worlds

D. Goodsell, Beata E. Mierzwa, 2021, The Biochemist.

CellPAINT: Turnkey Illustration of Molecular Cell Biology

Danielle A. Grotjahn, Benjamin A. Barad, D. Goodsell, 2021, Frontiers in Bioinformatics.

Scientific Delirium Madness 5.0: Gallery

D. Goodsell, T. Skalak, A. Yermakova, 2019, Leonardo.

Escherichia coli

D. Goodsell, 2020, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Putting proteins in context

D. Goodsell, 2012, BioEssays : news and reviews in molecular, cellular and developmental biology.

Making the step from chemistry to biology and back.

David S Goodsell, D. Goodsell, 2007, Nature chemical biology.

Visual methods from atoms to cells.

David S Goodsell, D. Goodsell, 2005, Structure.

Changing Aesthetics in Biomolecular Graphics

D. Goodsell, F. Samsel, S. Bruckner, 2023, IEEE Computer Graphics and Applications.

Molecular Illustration in Research and Education: Past, Present, and Future.

David S Goodsell, Jodie Jenkinson, D. Goodsell, 2018, Journal of molecular biology.

Symmetry at the Cellular Mesoscale

David S. Goodsell, D. Goodsell, 2019, Symmetry.

Chameleon - Dynamic Color Mapping for Multi-Scale Structural Biology Models

David S. Goodsell, Ivan Viola, Eduard Gröller, 2016, VCBM/MedViz.

Atomistic vs. Continuous Representations in Molecular Biology

David S. Goodsell, D. Goodsell, 1999, Visual Representations and Interpretations.

The Molecular Perspective: Protein Farnesyltransferase

D. Goodsell, 2004, Stem cells.

The molecular perspective: protein farnesyltransferase.

D. Goodsell, 2003, The oncologist.

Our Molecular Nature: The Body’s Motors, Machines and Messages

David S. Goodsell, D. Goodsell, 2011 .

Analysis of a data set of paired uncomplexed protein structures: New metrics for side‐chain flexibility and model evaluation

A J Olson, D. Goodsell, A. Olson, 2001, Proteins.

Photoactive Yellow Protein

D. Goodsell, 2017 .

The Molecular Perspective: DNA

D. Goodsell, 2000, The oncologist.

The molecular perspective: DNA.

D. Goodsell, 2000, Stem Cells.

The theoretical limits of DNA sequence discrimination by linked polyamides.

W. L. Walker, D. Goodsell, R. Dickerson, 1998, Proceedings of the National Academy of Sciences of the United States of America.

The molecular perspective: caspases.

D. Goodsell, 2000, The oncologist.

An Analysis of a Class of DNA Sequence Reading Molecules

David S. Goodsell, Wynn L. Walker, Elliot M. Landaw, 1998, J. Comput. Biol..

Cuttlefish: Color Mapping for Dynamic Multi‐Scale Visualizations

David S. Goodsell, Eduard Gröller, Manuela Waldner, 2019, Comput. Graph. Forum.

The Molecular Perspective: Microtubules and the Taxanes

D. Goodsell, 2000, Stem cells.

The molecular perspective: microtubules and the taxanes.

D. Goodsell, 2000, The oncologist.

Protein Flexibility in Virtual Screening: The BACE-1 Case Study

David S. Goodsell, Arthur J. Olson, Ettore Novellino, 2012, J. Chem. Inf. Model..

The Molecular Perspective: The Multidrug Transporter

D. Goodsell, 1999, The oncologist.

The molecular perspective: RAD51 and BRCA2.

D. Goodsell, 2005, Stem cells.

Morphology of protein-protein interfaces.

A J Olson, D. Goodsell, A. Olson, 1998, Structure.

The molecular perspective: Bcl-2 and apoptosis.

D. Goodsell, 2002, The Oncologist.

Structural symmetry and protein function.

A J Olson, D. Goodsell, A. Olson, 2000, Annual review of biophysics and biomolecular structure.

Cellulose Synthase

D. Goodsell, 2021, RCSB Protein Data Bank.

Visualization of macromolecular structures

D. Goodsell, R. Laskowski, R. Wade, 2010, Nature Methods.

The molecular perspective: methotrexate.

D. Goodsell, 1999, The oncologist.

GENERAL NATURE OF THE GENETIC CODE FOR PROTEINS

D. Goodsell, 2004 .

Molecular explorations of cancer biology and therapeutics at PDB-101

D. Goodsell, S. Burley, C. Zardecki, 2022, Oncogene.

Macromolecular graphics: Current Opinion in Structural Biology 1992, 2:193–201

David S. Goodsell, Arthur J. Olson, D. Goodsell, 1992 .

Evolutionary analysis of HIV‐1 protease inhibitors: Methods for design of inhibitors that evade resistance

Garrett M Morris, David S Goodsell, Michel F Sanner, 2002, Proteins.

Ionization state and molecular docking studies for the macrophage migration inhibitory factor: the role of lysine 32 in the catalytic mechanism

J M Briggs, A J Olson, D. Goodsell, 2000, Journal of molecular recognition : JMR.

Miniseries : Illustrating the Machinery of Life Escherichia coli *

D. Goodsell, 2010 .

ePMV embeds molecular modeling into professional animation software environments.

D. Goodsell, M. Sanner, A. Olson, 2011, Structure.

The Molecular Perspective: Cytochrome c and Apoptosis

D. Goodsell, 2004, The oncologist.

A visual review of the human pathogen Streptococcus pneumoniae.

Rikke Schmidt Kjærgaard, D. Goodsell, E. Andersen, 2017, FEMS microbiology reviews.

The Molecular Perspective: Interferons

D. Goodsell, 2001, The oncologist.

Green Fluorescent Protein (GFP)

D. Goodsell, 2003 .

Soluble proteins: size, shape and function.

A J Olson, D. Goodsell, A. Olson, 1993, Trends in biochemical sciences.

Rendering of volumetric data in biological systems

David S. Goodsell, Arthur J. Olson, D. Goodsell, 1990, Photonics West - Lasers and Applications in Science and Engineering.

Rendering volumetric data in molecular systems

David S. Goodsell, Arthur J. Olson, Is Mian, 1989 .

Revealing structural views of biology.

D. Goodsell, H. Berman, S. Burley, 2013, Biopolymers.

Coevolution and subsite decomposition for the design of resistance-evading HIV-1 protease inhibitors.

Christopher D. Rosin, C. Rosin, W. L. Walker, 1999, Journal of molecular biology.

Circadian Clock Proteins

D. Goodsell, 2008 .